Pairwise Alignments

Query, 344 a.a., Polyamine ABC transporter, periplasmic polyamine-binding protein from Pseudomonas putida KT2440

Subject, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 19/276 (6%)

Query: 44  EPWEKAGNGKIVAGEYNGEMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELDPAL 103
           E W K     +    ++ +  +   M+ +  + ++++ +++        + +FE+L    
Sbjct: 51  EAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFEDL--TA 108

Query: 104 FGNEADYVPGAIQPCG---VGFFVWSTVMAYNADKLKTAPTSWADFWD-TKQFPGKRGLR 159
             N A+  P  +Q CG   V +F  S  +AY        PT W++  D      G+ G+ 
Sbjct: 109 LPNRANNDPMWLQACGTHAVPYFWGSVGIAYRKSLFDKPPTQWSEVVDIAPAHRGRVGML 168

Query: 160 KGAKYTMEFALMADGVAPKDVYKVLATKEGQDRAFKKLDELKPSIQWWEAGAQPPQFLAS 219
           K +  T+  AL     +P     +  + +   +A++ LD   P I  +E      +    
Sbjct: 169 KDSVETLLPALYMLNASP-----ITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQ 223

Query: 220 GDVV-MSSAYNGRIAAVQKESNLKVVWNGGIYD------FDAWAIPKGAKNVEEAKKFIA 272
            D + M+ +Y+G   ++ +  N +  W+  + +       D  A+   + N  +AK F+ 
Sbjct: 224 TDNLHMAVSYSGDHYSLNRFFNTQD-WDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLD 282

Query: 273 YSVKPEQQKIYSENIAYGPANSKAVSLLSDEVKKDM 308
           + +KP+   I +E I     N KA +LL  E ++D+
Sbjct: 283 FLMKPDIAAINAEYIRAASPNYKARALLPVEHREDL 318