Pairwise Alignments

Query, 795 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

Subject, 805 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  846 bits (2186), Expect = 0.0
 Identities = 434/790 (54%), Positives = 560/790 (70%), Gaps = 1/790 (0%)

Query: 7   LLVIGCLWLPLIAWAKPEALPSVVLEPDQQQWLDTHRSLRVGLVLQAPYAQFDRRLQQLY 66
           +L +   ++ LI+ A P A  +V L+ D + WL+ H   RVG+V+ APYA++D+R ++L 
Sbjct: 1   MLALSLRFVLLISLALPFAAGAVTLDDDSRAWLEQHPEWRVGVVMGAPYAEYDQRQRRLS 60

Query: 67  GANVELVNSLAQTLRLDLTWRNFTDQGSLEHALQSGEIDFAPGLTQTPASLRLWLFSDPY 126
           G +V+L+  LA  L + L WR F+D+ +LE A + G ID APGL QTPA LRLW +SDP+
Sbjct: 61  GFHVQLMEHLADDLGVRLQWRRFSDEAALEKAAREGLIDVAPGLRQTPAGLRLWHYSDPF 120

Query: 127 MRVPQLVVGPRTGAMAVELEKLEAEQRVAVRMPSPLADYLRGNYGNLNLQGVPDDREALQ 186
           +R+P+L+VG R G  A++LE L   + V+   P P+ ++L  NY N+ +       +AL+
Sbjct: 121 LRIPRLLVGDRGGPRAIDLEYLHPSELVSAVGPGPVTEFLASNYPNITVLTATSQADALR 180

Query: 187 LVVGGQASFAVLDEAQLSRLSRESEFGELAVVGDIGLPQLLRIGSRRDWPMLADVLERGL 246
            V+  +AS+AV+DE   +RLS++ E+  LAVVGD+G PQLLRI SRRD   LA VL+  L
Sbjct: 181 QVLEAKASYAVIDEPVFARLSQQVEYDSLAVVGDLGNPQLLRIASRRDSAELAAVLDTAL 240

Query: 247 QAVPAKELEQLHQRWLQPKYPRLSESPGFWQNMALLFGLLLLCALATLVWQRRQQRQLER 306
           +  PA+E  QL ++WL+ +   L     +W++++LL G+LLL  L  L WQRRQ   LE 
Sbjct: 241 RQFPAREFSQLQEQWLKTRSIDLGREVSYWRSLSLLLGVLLLACLLMLAWQRRQHGVLES 300

Query: 307 SLLAARESLVERQVREEALRLSQFAIDQSTVGILWVNWDSHVRYANHAAERMLGYSEGAL 366
            L  AR  +  R+  EEA RL+QF +D STVGILW+NWDS VRYAN AAE +LG+S G L
Sbjct: 301 RLKTARRDIELREAAEEAQRLTQFCLDHSTVGILWLNWDSRVRYANQAAEVLLGHSSGGL 360

Query: 367 LERPLSDFEPSLNMDRWLELWKGARTGAGGVGQFETQCRRADQSLLPVELSLSFLRFRDS 426
           L++PL  F+P+L MD WL  W+ ARTG       E +  RAD    P  ++ SFLRF   
Sbjct: 361 LDQPLERFDPALGMDAWLARWRAARTGEDDRQVHECEWLRADGQRFPAAVTYSFLRFGSR 420

Query: 427 EYLVVYLADVTERHRALAALRESEARLKGIAGNVPGLVFRLERDPAEGDLEFPYISEGSE 486
           EYLVV+LAD+TER RA A L+ESEARLK +AGNVPGLVFRLERD  +  +   YISE S+
Sbjct: 421 EYLVVFLADITERRRASAQLQESEARLKAMAGNVPGLVFRLERDGPQAPVRVAYISEASQ 480

Query: 487 ALVGYAPSEIQHPQMGLRNLVHPEDRADYHRVQDLALASDQDWSWQGRILTRQGEQRWAD 546
            LVGY+   +  P  G+R+LVH +D A Y   Q LAL   QDW WQGRIL R GE RWAD
Sbjct: 481 RLVGYSAERLLQPGQGIRSLVHADDEAGYWASQQLALEKSQDWRWQGRILNRNGEVRWAD 540

Query: 547 IKASARHLGNGQVVWDGVVWDITQGKRAELALAKSQEQLRELSAHLESVREEEKARIARE 606
           I+AS R   +G+ VWDG+VWDIT  KR EL L  S+ QLREL+AHLE+VREEEKA IARE
Sbjct: 541 IRASVRGQPDGRQVWDGIVWDITDNKRIELELDASRAQLRELAAHLETVREEEKAHIARE 600

Query: 607 VHDELGQMLTVLKLEVSMCELAYAELDPGLNDRLASMKRLIAQLFQLVRDVATALRPPIL 666
           VHDELGQ+LTVLKLE SMCEL +A+LDP L  RL SMKRLIAQLFQ VRDVATALRPPIL
Sbjct: 601 VHDELGQVLTVLKLETSMCELGFADLDPALAQRLESMKRLIAQLFQRVRDVATALRPPIL 660

Query: 667 DAGIASAIEWQARRFEARTQIPCLVQVPDNLPALSDAKATGLFRILQEALTNVMRHAQAH 726
           DAGIASA+EWQARRFE R+ + CLV+VP+  PAL +AKA GLFRILQE+LTNVMRHA+A 
Sbjct: 661 DAGIASAVEWQARRFEERSGVACLVEVPECPPALGNAKAIGLFRILQESLTNVMRHARAQ 720

Query: 727 SVEIELVREGGQLRMTVSDDGQGFC-REQTRPTSFGLVGVRERVLMLGGSMTLESEPGEG 785
           +V ++L  EG  L + VSDDG GF    ++  +SFGLVG+RER+ MLGG + ++S+PGEG
Sbjct: 721 TVSVQLQLEGDLLCLRVSDDGCGFADAGRSAGSSFGLVGMRERIQMLGGQLCIDSQPGEG 780

Query: 786 TSLSVAIPLE 795
           T+++  +PL+
Sbjct: 781 TTITARVPLD 790