Pairwise Alignments

Query, 795 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

Subject, 778 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  104 bits (260), Expect = 2e-26
 Identities = 141/526 (26%), Positives = 224/526 (42%), Gaps = 79/526 (15%)

Query: 319 QVREEALRLSQFAIDQSTV-GILWVNWDSHVRYANHAAERMLGYSE----GALLERPLSD 373
           QVR+   RL    I ++ V GI+ ++ +  +   N AAER+ GY      GA + R +  
Sbjct: 275 QVRQREQRLD--GIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEVVGASINRLIPG 332

Query: 374 FEPSLNMDRWLELWKGARTGAGGV---GQFETQCRRADQSLLPVELSLSFLRFRDSEYLV 430
            E   + DR L  +   +TG  G+   G+ E   RR D SLLPVEL++S LR  D     
Sbjct: 333 GESGRH-DRSLRRY--LQTGQAGIIGRGREELALRR-DGSLLPVELAISELRLDDRRIFT 388

Query: 431 VYLADVTERHRALAALRESEARLK-GIAGNVPGLVFRLERDPAEGDLEFPYI--SEGSEA 487
             + D++ R  A   LRE+E R    IAG    +V        + D++   I  S+   A
Sbjct: 389 GLVRDISARKEADRQLRENEERYALAIAGTHEAIV--------DWDIDSDTITYSDRITA 440

Query: 488 LVGYAPSEIQHPQMGLRNLVHPEDRADYHRVQDLALASDQD-WSWQGRILTRQG-EQRWA 545
           +VG  P ++      +  L+HP+ R DY    D  L  +   +S   R+  R G E+RW 
Sbjct: 441 IVGLDPKDLDRSASWIA-LIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAEERWL 499

Query: 546 DIKASARHLGNGQVV-WDGVVWDITQGKRAELALAKSQEQLRELSAHLESVREEEKARIA 604
             +A+A    +GQ+    G V DIT  +R E       ++LRE     E     +   + 
Sbjct: 500 RHRATALRRPDGQIYRLSGAVGDITDSRRGE-------DRLREAKEAAEFANRAKSEFLT 552

Query: 605 REVHDELGQMLTVLKLEVSMCELAYAELDPGLN-----DRLASMKRLIAQLFQLVRDV-- 657
              H    ++ T L   +   E+ ++E+   L      D  AS++     L  ++ D+  
Sbjct: 553 NMSH----ELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILD 608

Query: 658 --------ATALRPPILDAGIASAIEWQARRFEARTQIPCLVQVPDNLPALSDAKATGLF 709
                   AT    P+  A I +++     +      +   + +   LP L   +A  L 
Sbjct: 609 VSRIEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLL-GEARRLK 667

Query: 710 RILQEALTNVMRHAQAHSVEIELVREG----GQLRMTVSDDGQGFCRE------------ 753
           ++L   L N ++   A   EI L   G    GQ+ + VSD G G   E            
Sbjct: 668 QVLINLLGNAIKFTPAGG-EIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQI 726

Query: 754 ------QTRPTSFGLVGVRERVLMLGGSMTLESEPGEGTSLSVAIP 793
                 +   T  GL   +  V + GG++ ++S PG GT ++V +P
Sbjct: 727 DGQLARRYEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 22/109 (20%)

Query: 503 LRNLVHP----EDRADYHRVQD-LALASDQDWSWQGRIL-----TRQGEQRWADIKASAR 552
           LR+LV P    E+RAD     D      D     +G +L      R G  RW        
Sbjct: 61  LRDLVAPDTGEENRADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRDRWG------- 113

Query: 553 HLGNGQVVWDGVVW----DITQGKRAELALAKSQEQLRELSAHLESVRE 597
            L +G  + DG ++    DIT  K     +A+S  ++RE  + LE   E
Sbjct: 114 -LVHGHRLKDGALFCVLRDITASKAGAARIAESNRRIREAESRLERALE 161