Pairwise Alignments

Query, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

Subject, 284 a.a., 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA from Synechocystis sp000284455 PCC 6803

 Score =  165 bits (418), Expect = 9e-46
 Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 22/275 (8%)

Query: 8   RARKRFGQNFLHDAGIIDRILRAINAKAG--------EHLLEIGPGQGALTEGLLGSGAQ 59
           R RKRFGQ++L+    +  I+ A + ++G        + LLEIGPG G LT+ LL +G  
Sbjct: 4   RPRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNP 63

Query: 60  LDVVELDKDLVPILQHKFADRSNFRLHQGDALKFDFNQL--GVPPRSL--KVVGNLPYNI 115
           +  VELD+DL   L+ K   R NF L +GD L  D N L    P  S   KVV N+PYNI
Sbjct: 64  VVAVELDRDLCLKLRKKLGQRENFLLLEGDVLILDLNALLQDFPQFSPLNKVVANIPYNI 123

Query: 116 STPLIFHLLSHAGLIRDMHF-----MLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170
           ++P++  LL      R   F     ++QKE+ ER+ A P    +G LS+ +QY  RV+ +
Sbjct: 124 TSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARVDWI 183

Query: 171 FNVGPGAFNPPPKVDSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLL 230
            +V P AF PPPKVDSA++RL P+ V   P  D  LL++++   F  RRK LRN +KGL+
Sbjct: 184 VDVPPKAFTPPPKVDSAVIRLTPYPVEQLPG-DRRLLDQLLCLGFANRRKMLRNNLKGLI 242

Query: 231 D----SAAIEAAGVDGSLRPEQLDLAAFVRLADQL 261
                +  +E   +  + R E L L  ++ L + L
Sbjct: 243 APEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277