Pairwise Alignments

Query, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

Subject, 269 a.a., dimethyladenosine transferase (RefSeq) from Shewanella loihica PV-4

 Score =  270 bits (690), Expect = 2e-77
 Identities = 143/262 (54%), Positives = 181/262 (69%), Gaps = 2/262 (0%)

Query: 7   HRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELD 66
           H ARKRFGQNFL D+ +I+RI+ AI+      ++EIGPG  ALTE +  S  +L VVELD
Sbjct: 9   HTARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALTEPVAESIDKLTVVELD 68

Query: 67  KDLVPILQ-HKFADRSNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLS 125
           KDLV  LQ H F  +    +HQGDALKFDF QL    + +KV GNLPYNISTPL+FHL  
Sbjct: 69  KDLVERLQTHPFL-KDKLEIHQGDALKFDFKQLVEEGKQMKVFGNLPYNISTPLMFHLFE 127

Query: 126 HAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVD 185
            A  I +MHFMLQKEVV R++A PG   +GRL++M QY C+V  +  V PG F PPPKVD
Sbjct: 128 FAEHIENMHFMLQKEVVLRLSAAPGTKAYGRLTVMAQYFCQVMPVLEVPPGCFTPPPKVD 187

Query: 186 SAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAGVDGSLR 245
           SA+VRLVP++  P+P KD  LL  +   AFN RRKTLRN +K LL+     A G+D S+R
Sbjct: 188 SAVVRLVPYKEKPYPCKDVDLLRHLCTTAFNMRRKTLRNNLKQLLNDDDFSALGIDASMR 247

Query: 246 PEQLDLAAFVRLADQLADQQQA 267
           PEQ+ +  +V +A+ L D++QA
Sbjct: 248 PEQITVQQYVAMANHLVDKRQA 269