Pairwise Alignments

Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 929 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  452 bits (1162), Expect = e-131
 Identities = 286/818 (34%), Positives = 432/818 (52%), Gaps = 26/818 (3%)

Query: 412  QPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQI 471
            Q ++R +   I     T   L  SE ++  +F+  P+ + +        L VN+A  +  
Sbjct: 117  QQLLRSIRYAIDRNLATT-RLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFF 175

Query: 472  GLPPDQVIGRTATDLDLWGVEGSGPLLLERLHQGGIRNLEM---SFRRSNGQLFTGLTSA 528
            G    + +  T  D+     +       E L    I +  +   ++R   G L       
Sbjct: 176  GYSQQEFLAMTVLDIQSEEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLI 235

Query: 529  ETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVN 588
              FE D  P  ++   DI++ +  ++     E+ F K  + + D LL+    D  +   N
Sbjct: 236  HDFEFDNQPCCLILAIDITEKQAARELAHQREQAFRKLLNDNRDPLLVI-SGDRRICYAN 294

Query: 589  EGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNRDGFVRDFTCHIRRSDGQIRL 648
                +L   +L   ++  SLDL +  D      L      DG V +   H   +D +   
Sbjct: 295  PAAQKLLKLNLEQ-LESQSLDLPLLSDKLTEWALTLP---DGSVAEVEIHRSETDWE--- 347

Query: 649  CELSARPLPITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDI---DQRIS 705
                       G    L   RDI ER   +++L+L     E +  GV+I D    D  + 
Sbjct: 348  -----------GQPADLLSLRDIAERKASEQQLRLLKESLEASFNGVVIVDAIEPDMPVI 396

Query: 706  AVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGE 765
             VN AF  ITGYSE E LG+  R+L   + DS     +   L+   +    I N RK+G+
Sbjct: 397  YVNPAFERITGYSEAEMLGRNCRILQGNERDSLQIEEIHRGLSQAENVHVVIRNFRKDGQ 456

Query: 766  LYPSWLTISAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRL 825
             + + L IS + N+   +THF+ V  DI+  K  + +L + A HD LTGLPNR + E+RL
Sbjct: 457  PFWNDLYISPIFNAQGNVTHFIGVQNDITEQKRYEEELSFSASHDVLTGLPNRAVLEDRL 516

Query: 826  QGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARL 885
            +     A       A+LF+DLD FK INDS+GH  GDLLL  +AQR+ EQVR  DTVAR+
Sbjct: 517  RQGCKMALRQKHSLAILFIDLDGFKLINDSIGHRSGDLLLVEVAQRMCEQVRAGDTVARI 576

Query: 886  GGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVST 945
            GGDEFIILL  L   +D  +IA++LLA    P+         +AS+GI+L   D    + 
Sbjct: 577  GGDEFIILLVDLKLENDVISIADRLLASVARPYHIQGIYLHVTASMGITLSDGDIEQPTQ 636

Query: 946  LIRNADAAMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSL 1005
            LI+ AD AMY++K +GRN  + YT DL  +  ER+ L +EL++A+E     L FQPK+  
Sbjct: 637  LIQQADLAMYKAKQEGRNNYQWYTNDLNLRLRERVHLRNELQKAIETEAFELYFQPKIEG 696

Query: 1006 KTQSLVGAEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHYQ 1065
             +  ++G EAL+RW HP  G + P  F+ +AE+ G I+ L  WVLE ACRQ++   Q   
Sbjct: 697  CSGQVIGLEALLRWQHPQMGFISPATFVPIAEDTGQIIPLSQWVLETACRQLRDLLQQGI 756

Query: 1066 PFGPLSINLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQL 1125
                +++N++  Q R  +  + ++  L+ +QLK+  L++EITEN +    E+A+  L +L
Sbjct: 757  AAPSVAVNISTVQFRRINFVKSVQSALQKYQLKSEHLEIEITENVLFDNTEKAIEKLQRL 816

Query: 1126 KKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSM 1185
            K+LGV ++IDDFGTG+SSLSYLK LP+D +KID+SF++ +  D  DAAI + II++   +
Sbjct: 817  KELGVNISIDDFGTGFSSLSYLKELPIDTVKIDRSFVQEINTDSRDAAITQGIISMAHHL 876

Query: 1186 QLTIIAEGVENQAQQRFLAAEGCEQIQGYIVSLPLPPE 1223
            +L ++AEGVE + Q +FL    C+Q QGY  + P+P E
Sbjct: 877  RLNVVAEGVETEQQFKFLQQSNCDQYQGYYFAKPMPFE 914



 Score = 57.0 bits (136), Expect = 7e-12
 Identities = 92/405 (22%), Positives = 165/405 (40%), Gaps = 34/405 (8%)

Query: 290 RRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPL 349
           R +   I R +A  + L  SE  YR L E+     W        +  V+  A    GY  
Sbjct: 121 RSIRYAIDRNLATTR-LAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQ 179

Query: 350 SDWLRPGFWRSILHPEDALWAQAYCDSETAAGRDHSLDYRVIR-ADGQPLWVRNIVSMIE 408
            ++L           E   + Q +         D ++     R   G  ++   ++   E
Sbjct: 180 QEFLAMTVLDIQSEEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHDFE 239

Query: 409 HGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFE 468
             +QP    L IDI+E +   +     EQ F  +     D LL+    D  +   N A +
Sbjct: 240 FDNQPCCLILAIDITEKQAARELAHQREQAFRKLLNDNRDPLLVI-SGDRRICYANPAAQ 298

Query: 469 EQIGLPPDQVIGRTATDLDLWGVEGSGPLLLERLHQGGIRNLEMSFRRSNGQLFTGLTSA 528
           + + L  +Q+    +  LDL       PLL ++L        E +    +G +       
Sbjct: 299 KLLKLNLEQL---ESQSLDL-------PLLSDKL-------TEWALTLPDGSVAEVEIHR 341

Query: 529 ETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVN 588
              + +G PA ++++RDI++ K ++QQL+  +E    +F+     ++ + + D  ++ VN
Sbjct: 342 SETDWEGQPADLLSLRDIAERKASEQQLRLLKESLEASFNGVV--IVDAIEPDMPVIYVN 399

Query: 589 EGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRL-VDQLNRDGFVRDFTCHI----RRSD 643
             F R+TGY     + +    L      NER  L +++++R G  +    H+     R D
Sbjct: 400 PAFERITGYSEAEMLGRNCRIL----QGNERDSLQIEEIHR-GLSQAENVHVVIRNFRKD 454

Query: 644 GQIRLCELSARPL--PITGVDCMLTIARDITERHLMQEKLQLAAT 686
           GQ    +L   P+      V   + +  DITE+   +E+L  +A+
Sbjct: 455 GQPFWNDLYISPIFNAQGNVTHFIGVQNDITEQKRYEEELSFSAS 499