Pairwise Alignments
Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440
Subject, 1071 a.a., Diguanylate cyclase/phosphodiesterase from Sinorhizobium meliloti 1021
Score = 392 bits (1007), Expect = e-113
Identities = 290/964 (30%), Positives = 474/964 (49%), Gaps = 75/964 (7%)
Query: 303 EQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSDWLRPGFWRSIL 362
E+ LR+SE HYR LV+ + W AD V P +L G + L G W +
Sbjct: 135 EETLRASEEHYRSLVDLHPQVPWTADTAGEVLE-VGPRWSELTGLGEKETLGSG-WAKAV 192
Query: 363 HPEDALWAQAYCDSETAAGRDHSLDYRVIRADGQPLWVRNIVSMIEHGHQPVMR--GLMI 420
HP+DA Q A+G +YR++ G W R + ++R G++
Sbjct: 193 HPQDAGALQEEWRRSLASGAPFDCEYRLLTKTGDYRWFRARAAAKRDADGKIVRWYGVLE 252
Query: 421 DISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQIGLPPDQVIG 480
DI E +R D LR SE +F ++ P ++ +A + G N + E G + +G
Sbjct: 253 DIDERRRAADDLRESEARFRAIADDAPVMIWVADPT-GDTSFFNRLWLETTGQTEAEALG 311
Query: 481 RTATDL----DLWGVEGSGPLLLERLHQGGIRNLEMSFRRSNGQLFTGLTSAET-FELDG 535
D+ D V+ + + +R+ E RR++G + + F DG
Sbjct: 312 FGWVDVIHPDDRQAVQET--FFRATAGKEPVRS-EYRLRRADGSWAWVIDVGQPRFSADG 368
Query: 536 T-PALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRL 594
T V +V DI++ + + Q ++ F +SPD + + +G L +NE R+
Sbjct: 369 TFLGYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVL-DMEGRPLLMNEAGRRI 427
Query: 595 TGYDLN-PTIDQTSLDLGIWVDLNERKRLVDQLNRDGFVRDFTCHIRRSDGQIRLCELSA 653
G + P QT +G D ++ + + + R R F +R + G+ R ++ +
Sbjct: 428 FGLNEGAPVTGQTWDSIGRASDADKVEAAWESVRRGKTAR-FEISVRDAGGEERCMDVIS 486
Query: 654 RPL------PITGVDCMLTIARDITERHLMQEKLQLA-----------ATVFENTAEGVL 696
P+ P +L+I RDIT+ +++ A ++V E+T + V+
Sbjct: 487 APITDHHGKPFR----ILSIWRDITDAKRASDEISRAQRHAEAAADQLSSVLESTMDSVM 542
Query: 697 ITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGE 756
+ D D R+ +N ++ + EALG+ L + + +F H + E
Sbjct: 543 LLDADWRVRYLNENARKLLQVGD-EALGRVFWKLFPEEEEGSF----------AKHCR-E 590
Query: 757 IYNKRKNG------ELYPSWLTISAVRNSDREITHFVAVFA-DISSIKHA-------QAK 802
+ ++R W+ +A D +++F DI+ + A Q +
Sbjct: 591 VMDRRVRSFFEDHLSSLGRWVEANASPTRDG-----ISIFCRDITERRRAEEDTLLAQKQ 645
Query: 803 LDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGD 862
+ + A HD LTGL NR F + L + ++ + AVL LDLD FK +ND+LGHP GD
Sbjct: 646 MAHMARHDMLTGLANRMFFRECFEEALN--ESNHARMAVLCLDLDGFKAVNDTLGHPAGD 703
Query: 863 LLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAGE 922
LL+ ++ RL + VR +TVARLGGDEF I+ P +A +A +L+ + PF
Sbjct: 704 ALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQRLIDTLSEPFSIEG 763
Query: 923 HEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTAQASERIAL 982
SIGI+ P+DGT LI+ AD A+Y +K+ GR + + + AQ +
Sbjct: 764 AAANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGTYKLFDVAMHAQLQAHQQM 823
Query: 983 EHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVPPEHFIHLAEENGTI 1042
+ +R A+ + E L +QP +SL+++ + EAL+RW HP G + P FI +AEE G I
Sbjct: 824 KITMRDALAKGEFELHYQPLVSLESRCVSCCEALLRWRHPERGMIAPSEFIPIAEETGLI 883
Query: 1043 LQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQLRHPHLARRIEQLLKHHQLKAGDL 1102
+ +G+W+L +ACRQ W + +++NL+ Q +H +L R + + L +L L
Sbjct: 884 VPIGEWILGEACRQAARWPERVS----VAVNLSPVQFKHRNLVRAVAKALSATRLDPARL 939
Query: 1103 QLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFI 1162
QLEITE ++ ++E L +L L++LGV++A+DDFGTGYSSL YL+ P D +K+D++F+
Sbjct: 940 QLEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFV 999
Query: 1163 RGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRFLAAEGCEQIQGYIVSLPLPP 1222
R LP AI +A+ LG+S+ +T EGVE + Q + +EG ++QGY+ S PLP
Sbjct: 1000 RDLPHGKESLAIVKAVAGLGQSLGMTTSVEGVETEDQLAVVDSEGFNEVQGYLFSRPLPA 1059
Query: 1223 EEFA 1226
E +
Sbjct: 1060 AEIS 1063
Score = 63.2 bits (152), Expect = 1e-13
Identities = 98/428 (22%), Positives = 171/428 (39%), Gaps = 36/428 (8%)
Query: 295 EISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSDWLR 354
+I R +LR SE +R + + + W AD T S+ + + G ++ L
Sbjct: 253 DIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDT-SFFNRLWLETTGQTEAEALG 311
Query: 355 PGFWRSILHPEDALWAQAYCDSETAAGRDHSLDYRVIRADGQPLWVRNI--VSMIEHGHQ 412
G W ++HP+D Q TA +YR+ RADG WV ++ G
Sbjct: 312 FG-WVDVIHPDDRQAVQETFFRATAGKEPVRSEYRLRRADGSWAWVIDVGQPRFSADGTF 370
Query: 413 PVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQIG 472
G ++DI+E + E A + ++ S+F PD + + +G L +NEA G
Sbjct: 371 LGYVGSVLDITERRAAEIAQQEAQAFIRSIFDSSPDCVRVL-DMEGRPLLMNEAGRRIFG 429
Query: 473 LPPD-QVIGRTATDLDLWGVEGSGPLLLERLHQGGIRNLEMSFRRSNG-QLFTGLTSAET 530
L V G+T + E + +G E+S R + G + + SA
Sbjct: 430 LNEGAPVTGQTWDSIGRASDADKVEAAWESVRRGKTARFEISVRDAGGEERCMDVISAPI 489
Query: 531 FELDGTPALVVAV-RDIS-------QLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDG 582
+ G P ++++ RDI+ ++ Q+ + + ++ + ++ D ++L +D
Sbjct: 490 TDHHGKPFRILSIWRDITDAKRASDEISRAQRHAEAAADQLSSVLESTMDSVML-LDADW 548
Query: 583 LLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNER------KRLVDQLNRDGFVRDFT 636
+ +NE +L + +L W E K + ++R VR F
Sbjct: 549 RVRYLNENARKLL------QVGDEALGRVFWKLFPEEEEGSFAKHCREVMDRR--VRSFF 600
Query: 637 CHIRRSDGQIRLCELSARPLPITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVL 696
S G R E +A P D + RDITER +E LA + A +
Sbjct: 601 EDHLSSLG--RWVEANASPTR----DGISIFCRDITERRRAEEDTLLAQKQMAHMARHDM 654
Query: 697 ITDIDQRI 704
+T + R+
Sbjct: 655 LTGLANRM 662
Score = 43.1 bits (100), Expect = 1e-07
Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 24/279 (8%)
Query: 463 VNEAFEEQIGLPPDQVIGRTATDLDLWGVEGSGPLLLER--LHQGGIRNLEMSFRRSNGQ 520
+N+A + +G +Q+IGRT D+ L G + + L+R L LE +G
Sbjct: 40 INDAACDLLGKDRNQLIGRTDHDI-LPGEQADRIVSLDRIVLSTSEGHELEEQITTPDGT 98
Query: 521 LFTGLTSAETFELDGTPA----LVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLL 576
T LT + +VV + DI+ L+ T++ L+ SEE + P +
Sbjct: 99 QRTLLTKKRCVSIPAGSTQEKFVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQ-VPW 157
Query: 577 SRQSDGLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR---DGFVR 633
+ + G +LEV + LTG T+ V + L ++ R G
Sbjct: 158 TADTAGEVLEVGPRWSELTGLGEKETLGSGWAKA---VHPQDAGALQEEWRRSLASGAPF 214
Query: 634 DFTCHIRRSDGQIRLCELSARPLPITGVDCMLT----IARDITERHLMQEKLQLAATVFE 689
D + G R AR D + + DI ER + L+ + F
Sbjct: 215 DCEYRLLTKTGDYRW--FRARAAAKRDADGKIVRWYGVLEDIDERRRAADDLRESEARFR 272
Query: 690 NTAEG----VLITDIDQRISAVNRAFSEITGYSEIEALG 724
A+ + + D S NR + E TG +E EALG
Sbjct: 273 AIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEAEALG 311
Score = 36.6 bits (83), Expect = 1e-05
Identities = 95/464 (20%), Positives = 179/464 (38%), Gaps = 59/464 (12%)
Query: 419 MIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQIGLPPDQV 478
++DI+ +RTE+ LR SE+ + S+ P + A + G +LEV + E GL +
Sbjct: 125 IVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTA-DTAGEVLEVGPRWSELTGLGEKET 183
Query: 479 IGRTATDLDLWG----VEGSGPLLLE---RLHQGGIRNLEMSFRRSNGQL-FTGLTSAET 530
+G W + +G L E L G + E G + +A
Sbjct: 184 LGSG------WAKAVHPQDAGALQEEWRRSLASGAPFDCEYRLLTKTGDYRWFRARAAAK 237
Query: 531 FELDGTPALVVAV-RDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNE 589
+ DG V DI + + L+ SE +F +P + ++ + +
Sbjct: 238 RDADGKIVRWYGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTG------DT 291
Query: 590 GFCRLTGYDLNPTIDQTSLDLGIWVDL---NERKRLVDQLNRDGFVRD---FTCHIRRSD 643
F + + +L G WVD+ ++R+ + + R ++ +RR+D
Sbjct: 292 SFFNRLWLETTGQTEAEALGFG-WVDVIHPDDRQAVQETFFRATAGKEPVRSEYRLRRAD 350
Query: 644 G------QIRLCELSARPLPITGVDCMLTIARDITERH----LMQEKLQLAATVFENTAE 693
G + SA + V +L DITER QE ++F+++ +
Sbjct: 351 GSWAWVIDVGQPRFSADGTFLGYVGSVL----DITERRAAEIAQQEAQAFIRSIFDSSPD 406
Query: 694 GVLITDIDQRISAVNRAFSEITGYSE-IEALGQTPRLLASGQHDSAFYLAMWHQLTAEGH 752
V + D++ R +N A I G +E GQT + D+ A W +
Sbjct: 407 CVRVLDMEGRPLLMNEAGRRIFGLNEGAPVTGQTWDSIGRAS-DADKVEAAWESVRRGKT 465
Query: 753 WQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPL 812
+ EI + GE + + + + + ++++ DI+ K A ++ H
Sbjct: 466 ARFEISVRDAGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRHAEA 525
Query: 813 TGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLD-RFKHINDS 855
++L VL + +V+ LD D R +++N++
Sbjct: 526 AA--------DQLSSVL-----ESTMDSVMLLDADWRVRYLNEN 556