Pairwise Alignments
Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440
Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H
Score = 478 bits (1229), Expect = e-138
Identities = 299/825 (36%), Positives = 432/825 (52%), Gaps = 20/825 (2%)
Query: 434 LSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQIGLPPDQVIGRTATDLDLWGVEG 493
LS F SV + P + R DG ++ N QIG D +IG T +
Sbjct: 36 LSAALFQSVVEALPVGTALLR--DGVIVHANATLAGQIGETIDTLIGSPLTSY----LTP 89
Query: 494 SGPLLLERLHQGGIR-------NLEMSFRRSNGQLFTGLTSAETFELDGTPALVVAVRDI 546
+ L ++++ +G I R +G + P LVV RD+
Sbjct: 90 ADALAVQKVVEGAIALHGGVPVRRIAHIRHISGSERVYSLRFSPLDNGPHPLLVVITRDM 149
Query: 547 SQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQT 606
+ + L+ +E K+ F + +G+ S DG L+VN R+ GY +
Sbjct: 150 TAQVAAENALRAAEGKYRAIFENAVEGIYQS-TPDGTYLDVNPALARIYGYASPAELIAH 208
Query: 607 SLDLG--IWVDLNERKRLVDQLNRDGFVRDFTCHIRRSDGQIRLCELSARPL--PITGVD 662
D+ ++VD +R + G VRDFT + R DG +AR + P V
Sbjct: 209 FTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVRGPDNEVL 268
Query: 663 CMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEA 722
DIT + QE ++L VF + AEG+++ + D + VN AF +TG +
Sbjct: 269 YYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDM 328
Query: 723 LGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDRE 782
G+ RL ASG H++ F + ++ G W+GEI+ +R+ G Y +T++AVR E
Sbjct: 329 EGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGE 388
Query: 783 ITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVL 842
TH+VA DI+ K + + +QA+ D LT LPNR L +RL+ + AQ + RQ V+
Sbjct: 389 TTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVM 448
Query: 843 FLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSD 902
FLDLDRFK INDS GH GD +LK A+RL+ VR D+V RLGGDEFI++L +
Sbjct: 449 FLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHA 508
Query: 903 ASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGR 962
+ IA K+L + PF G E F S+GI+ +P G L+RNAD AMY +K G
Sbjct: 509 GAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGE 568
Query: 963 NRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWSHP 1022
R +T D+ ++ + +E +LR A+ R+E L FQPK+ +L+GAEALIRW HP
Sbjct: 569 RRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVRADL-TLIGAEALIRWRHP 627
Query: 1023 TFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQLRHP 1082
G + P FI LAEE+G IL +G W L +AC ++ +W+ +S+N++ Q +
Sbjct: 628 EKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQ 687
Query: 1083 HLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYS 1142
L + Q+L L+ L LEITE + E A+ L LK LGV L+IDDFGTGYS
Sbjct: 688 TLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYS 747
Query: 1143 SLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRF 1202
SL+YLK P+D LKID++F+R + DAAI IIAL R++ +++AEGVE Q F
Sbjct: 748 SLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEF 807
Query: 1203 LAAEGCEQIQGYIVSLPLPPEEFAAAFLRIALSDLSDGTGAKPSL 1247
L + C+ QG++ S PLPP EF FLR A + + PS+
Sbjct: 808 LGSRDCQNFQGFLYSRPLPPAEF-TTFLRTAKLETATPPDLVPSI 851
Score = 38.1 bits (87), Expect = 3e-06
Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 22/275 (8%)
Query: 329 ANDFTYSYVSPHAEDLLGYPLSDWLRPGFWRSILHPEDALWAQAYCDSETA--AGRDHSL 386
AN + + L+G PL+ +L P DAL Q + A G
Sbjct: 63 ANATLAGQIGETIDTLIGSPLTSYLTPA---------DALAVQKVVEGAIALHGGVPVRR 113
Query: 387 DYRVIRADGQPLWVRNIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQC 446
+ G S +++G P++ + D++ E+ALR +E K+ ++F+
Sbjct: 114 IAHIRHISGSERVYSLRFSPLDNGPHPLLVVITRDMTAQVAAENALRAAEGKYRAIFENA 173
Query: 447 PDILLIARHSDGCLLEVNEAFEEQIG-LPPDQVIGRTATDLDLWGVEGSGPLLLERL--H 503
+ + + DG L+VN A G P ++I V+G+ +RL
Sbjct: 174 VEGIYQST-PDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGEFQRLMRE 232
Query: 504 QGGIRNLEMSFRRSNGQLFTGLTSAETFELDGTPALVV--AVRDISQLKETQQQLQTSEE 561
G +R+ R +G +A L V DI+ Q+Q Q +
Sbjct: 233 TGEVRDFTAEVWRCDGHTIWITENARCVRGPDNEVLYYEGTVEDIT----AQRQSQETMR 288
Query: 562 KFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTG 596
K F + +G++L + D + VN F +TG
Sbjct: 289 LLGKVFTSIAEGIVL-LERDLTVRTVNPAFEAMTG 322