Pairwise Alignments

Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 714 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  476 bits (1226), Expect = e-138
 Identities = 245/567 (43%), Positives = 358/567 (63%), Gaps = 4/567 (0%)

Query: 661  VDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEI 720
            ++ M T AR       ++ + +LA TVF  ++E ++ITD + RI  VN AF+ ITG+S  
Sbjct: 137  LEAMATCARAAR----LESEHRLATTVFHASSEAIMITDAENRIVDVNPAFTRITGFSRG 192

Query: 721  EALGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSD 780
            E LG+ PR+L SG     FY  MW  +   GHW+GEI+N+R+NGELYP WL +  V + +
Sbjct: 193  EVLGRNPRILQSGIQSEHFYREMWAAINQYGHWRGEIWNRRRNGELYPEWLAVDRVLSPE 252

Query: 781  REITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGA 840
              + ++VA+++DIS  K A+A++ Y AH+D LT LPNR LF +R    L  A+  ++  A
Sbjct: 253  GAVLNYVAMWSDISERKEAEARIHYLAHYDALTDLPNRVLFNDRFTQALIHARRYDQSVA 312

Query: 841  VLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKP 900
            ++F+DLDRFK +ND+LGH VGD LLK +A+RL+  VR+ DTV+R GGDEF++LL  L   
Sbjct: 313  LMFVDLDRFKVVNDTLGHRVGDELLKQVAERLRRCVREEDTVSRQGGDEFVVLLANLDMS 372

Query: 901  SDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAK 960
            +DA+ +++K+L     P     HE   + SIGI+ YP DG D  TL++NAD AMYR+K+ 
Sbjct: 373  ADAAVVSDKILEALAEPMYFEGHELSVTCSIGIACYPSDGADPDTLMKNADLAMYRAKSV 432

Query: 961  GRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWS 1020
            GRN  + ++ +L   A  R+ LE+ +RRA++R+E  L + P++   +  L+  EALIRW 
Sbjct: 433  GRNNYQFFSPELEQGALTRLTLENAMRRALDRDEFELHYLPQVDNPSGRLLSLEALIRWQ 492

Query: 1021 HPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQLR 1080
            HP  G + P  FI LAEE+G +L +  WVL +  RQ+  W++      P++INL  AQLR
Sbjct: 493  HPERGLLLPSQFIPLAEESGLVLPISLWVLRRVARQLADWRRQNLTLVPVAINLCEAQLR 552

Query: 1081 HPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTG 1140
             P  A  + ++L    ++   ++LE TE  +M   E  L VL  LK+LGV + +DDFG G
Sbjct: 553  QPDFAEALGRILSEEGVEGRWIELEFTEGALMHDTERNLRVLSALKRLGVGITLDDFGVG 612

Query: 1141 YSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQ 1200
            YS+L+ L+RLP+D LKID+S +  +  +  DA I  AII++ +SM L ++AEGVE   Q 
Sbjct: 613  YSNLNVLRRLPVDTLKIDRSLVTDVTRNEDDAVIVDAIISMAQSMNLKVVAEGVETADQA 672

Query: 1201 RFLAAEGCEQIQGYIVSLPLPPEEFAA 1227
             F  A  C +IQG+  S  +   E AA
Sbjct: 673  GFFKARACAEIQGHFFSKAIGAVEVAA 699



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 555 QLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTGYD------LNPTIDQTSL 608
           +L++        FHAS + ++++  ++  +++VN  F R+TG+        NP I Q+ +
Sbjct: 148 RLESEHRLATTVFHASSEAIMIT-DAENRIVDVNPAFTRITGFSRGEVLGRNPRILQSGI 206



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 412 QPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQI 471
           +P+    +++   T      L    +   +VF    + ++I   ++  +++VN AF    
Sbjct: 129 KPLKASALLEAMATCARAARLESEHRLATTVFHASSEAIMIT-DAENRIVDVNPAFTRIT 187

Query: 472 GLPPDQVIGRTATDLDLWGVEGSG--PLLLERLHQGGIRNLEMSFRRSNGQLF-TGLTSA 528
           G    +V+GR    L   G++       +   ++Q G    E+  RR NG+L+   L   
Sbjct: 188 GFSRGEVLGRNPRILQS-GIQSEHFYREMWAAINQYGHWRGEIWNRRRNGELYPEWLAVD 246

Query: 529 ETFELDGTPALVVAV-RDISQLKETQQQL 556
                +G     VA+  DIS+ KE + ++
Sbjct: 247 RVLSPEGAVLNYVAMWSDISERKEAEARI 275