Pairwise Alignments

Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 935 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  412 bits (1060), Expect = e-119
 Identities = 226/561 (40%), Positives = 328/561 (58%), Gaps = 9/561 (1%)

Query: 670  DITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRL 729
            D+T R    E+L+LAA VFE+  EG+L+TD    I  VNRAFS ITGY+  E +GQTPRL
Sbjct: 250  DVTSRRRSAEELRLAAKVFEHAGEGILVTDAQGHIVNVNRAFSVITGYAREEVMGQTPRL 309

Query: 730  LASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAV 789
            L S ++D  FY   W  L    +W GE++ +RKNG  + + LTISAV +    I H+ A+
Sbjct: 310  LESDRYDDEFYQTAWQALREHDYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAM 369

Query: 790  FADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRF 849
            F+DI+++K  Q +L+  AH+D LTGLPNR L  +RL+  +   +      AV+F+DLD F
Sbjct: 370  FSDITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIAQTRRRGMHLAVVFIDLDGF 429

Query: 850  KHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANK 909
            K +ND  GH VGD LL  +++R+ + +R+ DT+ARLGGDEF+ +L  L   S +  I ++
Sbjct: 430  KKVNDQHGHAVGDKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPDISLSVPILDR 489

Query: 910  LLACFNAPFQAGEHEFFTSASIGISLYPQ-DGTDVSTLIRNADAAMYRSKAKGRNRVEAY 968
            L+     P   G+     SASIG+S YPQ +  D   L+R AD AMY +K  G+NR   +
Sbjct: 490  LIEVAAQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYFAKQAGKNRYHVF 549

Query: 969  TRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVP 1028
              +       R      +  A+   +  L FQPK++++T  ++GAEALIRW HP  G + 
Sbjct: 550  DTEKDRTLRTRHEGFDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPARGLLS 609

Query: 1029 PEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQ---HYQPFGPLSINLAGAQLRHPHLA 1085
            P  FI + E +   + +G W +E    Q++ W++   H     P+S+N+    L  P   
Sbjct: 610  PASFIPIIENHPLGIDVGKWTIEAVLTQIEVWRKAGLHV----PISVNIGARHLLQPDFI 665

Query: 1086 RRIEQLLKHHQ-LKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYSSL 1144
              +  +L  H   +  DL+LEI E   +    +   ++   +++G++ A+DDFG+GYSSL
Sbjct: 666  MHLRGMLSRHPGAQPQDLELEILETSAVEDFVQVSQLMALCERMGLRFALDDFGSGYSSL 725

Query: 1145 SYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRFLA 1204
            +YLKRLP  +LKID+ FIR + +DP D AI  A++AL RS     IAEGVE+      L 
Sbjct: 726  TYLKRLPAHLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLL 785

Query: 1205 AEGCEQIQGYIVSLPLPPEEF 1225
              GCE  QGY +  P+P  EF
Sbjct: 786  RLGCEWGQGYAIGHPMPAHEF 806



 Score = 55.8 bits (133), Expect = 2e-11
 Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 31/281 (11%)

Query: 287 RINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLG 346
           R+ + L+S   +R  L   +    Y YR   +  S            + Y S   +++ G
Sbjct: 125 RVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSH-----------FPYASARIQEIYG 173

Query: 347 YPLSDWLR---PGFWRSILHPEDALWAQAYCDSETAAGRDHSL---DYRVIRADGQPLWV 400
               D +    P F  + LHPED        ++  A+G+  +L   +YRV   DG+ +WV
Sbjct: 174 VAPEDVVEDATPAF--AALHPEDR---DRVHETIQASGQSLALWHDEYRVQFPDGRVIWV 228

Query: 401 RNIVSMIEHGHQPVM-RGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGC 459
               S        ++  G + D++  +R+ + LRL+    A VF+   + +L+   + G 
Sbjct: 229 EGEASPEAMPDGSILWHGYIHDVTSRRRSAEELRLA----AKVFEHAGEGILVT-DAQGH 283

Query: 460 LLEVNEAFEEQIGLPPDQVIGRTATDLDLWGVEGSG-PLLLERLHQGGIRNLEMSFRRSN 518
           ++ VN AF    G   ++V+G+T   L+    +        + L +    + E+  RR N
Sbjct: 284 IVNVNRAFSVITGYAREEVMGQTPRLLESDRYDDEFYQTAWQALREHDYWHGELWCRRKN 343

Query: 519 GQLFTGL-TSAETFELDGTPALVVAV-RDISQLKETQQQLQ 557
           G  F  L T +   ++ G      A+  DI+ LKE QQQL+
Sbjct: 344 GSQFAALLTISAVPDMRGNIEHYAAMFSDITALKENQQQLE 384