Pairwise Alignments

Query, 236 a.a., Exonuclease from Pseudomonas putida KT2440

Subject, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 40  RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQ--FERTLHRPLQKTNA----SVL 93
           R V+LD ET+G+N     V  +G   IE G ++   +    R  H+ +    A    ++ 
Sbjct: 9   RQVILDTETTGMNQGSGAVY-LGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIA 67

Query: 94  IHGLGPSALAAGCDPAEALLDLLDFIGNSPVLAFHAPFDQRMLAR--ALKESLGYRLQS- 150
           +HG+    +A      +   + +DFI  + ++A +A FD   +    +L + LG + +  
Sbjct: 68  VHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTRDI 127

Query: 151 -PFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEERHHASA--DAQVTAELAL 202
              LD  ++A  L+P    ++  LD    R+G+    RH+  A  DA++ A++ L
Sbjct: 128 CEILDSLDIAKFLHPG---QKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179