Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 168 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

 Score = 82.0 bits (201), Expect = 5e-21
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 3/171 (1%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREP 60
           +S    PH+      +  H   LL +L R + C + A DL Q+T++R   RE        
Sbjct: 1   VSRPSDPHS--TDGQFESHSSELLHFLTRQVKCAELAADLRQETWLRFRRRESGQEIGNL 58

Query: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKL 120
           RAFL  +A+ L+ D +RR    +    EL++   + QP PE      + L+ + R++  L
Sbjct: 59  RAFLYRIARNLIID-YRRQQKSRPVEEELSIELVSAQPGPERAASDAQRLERLQRVVQDL 117

Query: 121 SSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEP 171
               R A   +RLDG+   EI ERLGVS S   +YI + +  C   +  +P
Sbjct: 118 PPHLRQALFWNRLDGLTQREIGERLGVSESMAGRYILKALEHCQQQMDPQP 168