Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 160 a.a., Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis from Pseudomonas fluorescens FW300-N1B4

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 23  LLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPRE-PRAFLAAVAKGLMFDHFRRAAL 81
           L+ +L   +  RQ AED+  D ++R+L R   DTP E PRAFL   A  L+ D  RR AL
Sbjct: 9   LVYFLNAKLGNRQVAEDVVHDAYLRVLERSS-DTPIEQPRAFLYRTALNLVIDDHRRNAL 67

Query: 82  EQAYLAELALIPEAEQ---PSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGH 138
            Q  +  L ++   E+   PSP       + L  + R L +L    R +FL  ++DG+ H
Sbjct: 68  RQ--VESLDVLDSEERYFTPSPHNSLDHGQRLDMLQRALAELPKLCRESFLLRKIDGLSH 125

Query: 139 AEIAERLGVSVSRVRQYIAQGMRQCYVAL 167
            EIAE LG+S + V ++I   M+ C V +
Sbjct: 126 PEIAEHLGISRALVEKHIVNAMKHCRVRM 154