Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 165 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 71.6 bits (174), Expect = 6e-18
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 12/153 (7%)

Query: 16  YRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRL---LGREQLDTPREPRAFLAAVAKGLM 72
           Y  HR  L+A L R   CR  AEDL+QD +++L   +  ++LD P+   A+L  +A  L+
Sbjct: 15  YIHHRQQLVAHLTRLGGCRALAEDLAQDAWLKLAQIMPEQRLDNPK---AYLFRIATNLL 71

Query: 73  FDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILED---LKAIDRLLGKLSSKARAAFL 129
            D  RR AL  A       + EA Q  P     ++E+   L+ + R L  L  + R  F 
Sbjct: 72  RDAMRRRALLGASDEGPLELIEAVQADP---CALVENHCALQCVLRQLADLPPRCREVFE 128

Query: 130 HSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQ 162
            +RL+G+  AEIAERLG+SV+ V   +A+  ++
Sbjct: 129 LARLEGLSQAEIAERLGISVNTVIAQLAKARQR 161