Pairwise Alignments

Query, 370 a.a., putative Membrane protein from Pseudomonas putida KT2440

Subject, 393 a.a., PepSY-associated TM helix (NCBI) from Rhodospirillum rubrum S1H

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 104/384 (27%), Positives = 156/384 (40%), Gaps = 48/384 (12%)

Query: 2   KSPTIRRWSLIHTWSSLVCTLFLLLLAVTGLPLIFHHELEHLLGDAPELREMPAGTPHLD 61
           KS   R W L+H+W  L    ++  L  TG      HE+  L+   PE+R   +G P   
Sbjct: 7   KSSGARLWFLVHSWMGLPLWAYVFFLCFTGTLASVSHEIMWLID--PEVRAGASGDP-AP 63

Query: 62  LQQLVLKAEQHRPGEVMQYFGYDEDEPNGVVAI-----TAATASTDPNLSHTFMLDARTG 116
              L+  AE   PG      G+  D     V +       A A  DP  +    + +   
Sbjct: 64  ASALIAAAEAAAPGSRALSVGWGADYMAATVRLGLENGLYAMAYVDPVSATLRGIGSDNP 123

Query: 117 EAVAMPAANGGFMMVMLRLHVDMFAGLP-GKLLLAFMGVLFIVAIVSGTVLYAPFMRR-L 174
             V + A +G  +            G P G  L+A M +  + ++V+G V+Y  F R   
Sbjct: 124 LPVFLRALHGWLLS-------PWTGGYPWGWYLVAVMAIPLLGSVVTGMVVYKRFWRAFF 176

Query: 175 EFGTVRHKKSRRLRWLDLHNLIGVVTLAWALTVSVTG----VISALSDLVIAAWRNDSLA 230
               +R  K  R+   DLH L G  +L + L + VTG    V +A+ DL  A    D  A
Sbjct: 177 TRPKLRTGKGARVLLGDLHRLGGAWSLWFVLLIGVTGLWFLVQAAIVDLRGAL---DPGA 233

Query: 231 AMVAPYRDAPPLVERAPATR--------LLDIAEQAAPGMRPDFIAFPGTRFSSEHHYAV 282
            +V    D   L +RAP            L  A+    G R   + FPGT F   + Y  
Sbjct: 234 PLVV--IDRADLPKRAPGEHPPPAEVDAALAAAQATHAGGRVTALYFPGTAFDPIYAYG- 290

Query: 283 FMNGATHLSSHLFTPVLIDARTLEV---TAVGDRPWYMDAMGLSQPLHFGDYG-----GR 334
             +G   L S +     +  RT EV      GD      A  + +PLH GD+G     G 
Sbjct: 291 --SGRVPLLSDV---TYVHPRTAEVLYSKKGGDSGPLGLASQILRPLHVGDFGGPGALGL 345

Query: 335 PMQILWALLDVLTIIVLGSGLYLW 358
            ++ +W L  ++  +++ SG+ +W
Sbjct: 346 AIKGVWFLFGLILSMLIFSGMLIW 369