Pairwise Alignments

Query, 370 a.a., putative Membrane protein from Pseudomonas putida KT2440

Subject, 555 a.a., PepSY-associated TM helix (NCBI) from Rhodospirillum rubrum S1H

 Score = 61.2 bits (147), Expect = 6e-14
 Identities = 91/397 (22%), Positives = 151/397 (38%), Gaps = 44/397 (11%)

Query: 1   MKSPTIRRWSLIHTWSSLVCTLFLLLLAVTGLPLIFHHELEHL------------LGDA- 47
           M    +R +  +HTW+ ++  + L +    G   +F   L               L DA 
Sbjct: 1   MPPDILRIYKTVHTWTGILTGMALFIAFYAGAITVFKEPLARWASPPMTTPVAPSLDDAL 60

Query: 48  ----PELREMPAGTPHLDLQQLVLKAEQHRPGEVMQYFGYDEDEPNGVVAITAATASTDP 103
                 LR  P       L    L+  +H PG +       +    G  +    T   + 
Sbjct: 61  PLIISTLRASPEAAREFSLH---LREAEHLPGRLEW-----QSPAEGAESHRHDTLGMEH 112

Query: 104 NLSHTFMLDARTGEAVAMPAANGGFMMVMLRLHVDMFAGLPGKLLLAFMGVLFIVAIVSG 163
            ++H     A   EAVA P+    F+ V+ R+    F     + ++  +  L+ +A+VSG
Sbjct: 113 FVAHPGEDGAARIEAVA-PSKLAEFIDVLHRVVGLPFDSDTARWIMGVIACLYALALVSG 171

Query: 164 TVLYAPFMRRLEFGTVRHKKSRRLRWLDLHNLIGVVTLAWALTVSVTGVISALSD----L 219
            VL  P + +  F     +  +RL W D HN++G+ +L + L +++T  + A  D    L
Sbjct: 172 VVLLVPTLVKDLFALRPGRNLKRL-WRDAHNVVGLFSLPFHLVMALTATVFAFHDDLYSL 230

Query: 220 VIAAWRNDSLAAMVAPYRDAPPLVERA-------PATRLLDIAEQAAPGMRPDFIAFPGT 272
                 +  LA++      APP    A       P   LL      +P   P  + +   
Sbjct: 231 QDTVIHDGRLASVWQAPSPAPPQPGEARDPGALLPPADLLARVRALSPTFTPIRLHYTQA 290

Query: 273 RFSSEHHYAVFMNGATHLSSHLFTP-VLIDARTLEVTAVGDRPWY----MDAMGLSQPLH 327
                    V+   AT L S      V ID  +  +      P +    +  +G    LH
Sbjct: 291 T-GPRAMVRVWGQDATALVSRPAGGFVAIDPYSGRIVNADYLPGHQSPALTTIGSFFALH 349

Query: 328 FGDYGGRPMQILWALLDVLTIIVLGSGLYLWWSKQRK 364
           F  YGG P++ ++ LL +    +  SG  LW   +RK
Sbjct: 350 FATYGGLPVKWMYFLLGLAGAWLFYSGNLLWIESRRK 386