Pairwise Alignments

Query, 370 a.a., putative Membrane protein from Pseudomonas putida KT2440

Subject, 570 a.a., PepSY-associated TM helix domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 57.8 bits (138), Expect = 7e-13
 Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 49/303 (16%)

Query: 1   MKSPTIRRWSLIHTWSSLVCTLFLLLLAVTGLPLIFHHELEHLLGDAPELREMPAGTPHL 60
           MK    R  + +HTW+ L     LLL+   G    F HE+   L   PEL +        
Sbjct: 1   MKETFFRSMTWMHTWAGLAVCWLLLLIFFAGSLSYFRHEIS--LWSKPELHK-------- 50

Query: 61  DLQQLVLKAEQHRPGE-VMQYFGYDEDEPNGVVAITAATAST-DPNLSHTFMLDARTGEA 118
               +    +Q R G+ + +   Y  D+     + T +  S   P LS  +  + + GE 
Sbjct: 51  ---SVFQDYDQQRIGQQIAKGQAYLADKAPDAASWTISFPSERKPYLSFGWADEPKKGER 107

Query: 119 VAM----PAANGGFMMV-----------MLRLHVDM--FAGLPGKLLLAFMGVLFIVAIV 161
                    +  G  M+             RLH D+     +  + ++    +  ++A++
Sbjct: 108 RGKFHEHVVSQDGQQMITEIRDSRGGNFFYRLHFDLHYLPVVAARWIVGLATMAMLIALI 167

Query: 162 SGTVLYAPFMRRLEFGTVRHKKSRRLRWLDLHNLIGVVTLAWALTVSVTGVISAL----- 216
           SG V++    +  +F + R  K  R  WLD HN+  V+ L + L ++ TG+I+ +     
Sbjct: 168 SGVVIHKRIFK--DFFSFRPAKGSR-SWLDAHNVSAVMALPYHLIITYTGLITLMFMFMP 224

Query: 217 ------SDLVIAAWRNDSLAAMV--APYRDAPPLVERAPATRLLDIAEQAAPGMRPDFIA 268
                  D  + A+R D   A +   P +DA PL+E A     ++    AAP ++   I+
Sbjct: 225 WGALQEYDGDVRAFRADLNPARIQTKPSKDAAPLIEAASLLPQIEQQWGAAP-LKQVSIS 283

Query: 269 FPG 271
            PG
Sbjct: 284 APG 286