Pairwise Alignments

Query, 370 a.a., putative Membrane protein from Pseudomonas putida KT2440

Subject, 376 a.a., PepSY-associated TM helix domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (259), Expect = 4e-27
 Identities = 97/373 (26%), Positives = 166/373 (44%), Gaps = 42/373 (11%)

Query: 13  HTWSSLVCTLFLLLLAVTGLPLIFHHELEHLLGDAPELREMPAGTPHLDLQQLVLKAEQH 72
           H W  L   L L ++A+TG  L+F  ELEHLL   PE + + A    L   QL+  A++ 
Sbjct: 9   HGWLGLFAALPLFIIALTGSVLVFKSELEHLL--MPE-KVLAASETRLSFTQLLRSADEA 65

Query: 73  RPGEVMQYFGYDEDEPNGVVAITAATASTDPNLSHTFMLDARTGEAVAMPAANGGFMMV- 131
            P    +  G+ +  PN   A     A           +D   G  ++ P     +++  
Sbjct: 66  LPQH--EILGW-QFAPNAGEADKLYVAKQGTYDWQLLFVDPSQGSLLSQPVGLSHYLLDW 122

Query: 132 MLRLHVDMFAGLPGKLLLAFMGVLFIVAIVSGTVLYAPFMRRLEFGTVRHKKSRRLRWLD 191
           +L LH  + A   G  + A + +L I+  +SG +L+  F R   F T+R  KS RL   D
Sbjct: 123 LLELHYTLLADHLGLAVTALVSILLILLSLSGFILHRQFWRT--FFTLRWGKSLRLFLSD 180

Query: 192 LHNLIGVVTLAWALTVSVTGVISALSDLVIAAWRNDSLAAMVAPYRDAPP---LVERAPA 248
            H ++G++     L +  TG           AW N  +  ++  + +  P   +V ++  
Sbjct: 181 SHKMLGIIGAPLFLILGFTG-----------AWWN--IEHIIEEWHEPDPKTLIVTQSYY 227

Query: 249 TRLLDI------AEQAAPGMRPDFIAFPGTRFSSEHHYAVFMNGATHLSSHLFTPVLIDA 302
            + LD+      A Q  PG +  ++ FP   ++  H +    +    L S   + V  D 
Sbjct: 228 NKQLDVEALLTQATQVIPGFQTHYVRFPDKSYAGIHLFGAAQDRGA-LRSDYGSIVSFDD 286

Query: 303 RT------LEVTAVGDRPWYMDAMGLSQPLHFGDYGGRPMQILWALLDVLTIIVLGSGLY 356
           ++      ++ T  G    ++D+    +PLH+G++GG   +I+W ++  L  ++  SG Y
Sbjct: 287 KSGQLSASVDATKAGALYQFVDSF---RPLHYGNFGGLVSKIIWCVVGFLPSLMALSG-Y 342

Query: 357 LWWSKQRKPWEAR 369
           L W  +RKP   R
Sbjct: 343 LMWRARRKPQTRR 355