Pairwise Alignments

Query, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  370 bits (951), Expect = e-106
 Identities = 221/589 (37%), Positives = 338/589 (57%), Gaps = 14/589 (2%)

Query: 305 SGQPRAWQSDEIAFAGELADQFAQVI-TNHKRR--AAASALHLFQRAVEQSASAF----- 356
           +G  +AWQ  + A    L      ++   H RR      A H+ + +++Q+A+ F     
Sbjct: 32  AGDSQAWQMGKGALFVALTSALIFLLGRQHFRRFDEQQRAQHVQETSLKQAAAVFDSTQE 91

Query: 357 --LLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPALENLSELLFDSPSSLAMGNSW 414
             L+ +   R+ +VNP+F+ IT YST+EV G+      + ++ +E       +L     W
Sbjct: 92  GVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDAEFYQQMWLALKDKGEW 151

Query: 415 QGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYEDVTQTKLAQQRIERLAYTDNLT 474
            GE  +RRKN E Y    ++  ++ +  +L+HY+ ++ D++  K +++ +++LA+ D L 
Sbjct: 152 SGEIWNRRKNGEVYPQWQNLRCIHDNQGQLSHYVAVFSDLSALKRSREELDQLAHYDPLV 211

Query: 475 NLGNRPAFIRSL--DERFARDGESSMCLLLVDIDNFKRINDSLGHQTGDKLLISLARRLR 532
           NL NR  F      D   AR  + S  LLL+D+D+FK IN+SLGH  GD LL +++ RL 
Sbjct: 212 NLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESLGHSLGDALLQAVSTRLS 271

Query: 533 NSLHSGGILARFASNEFAVLLDDTSLEDGQGVAQQLLCTLDKPMFVDNQLINVTASVGLA 592
             L  G  L R   +EFA+L +    E    +A ++L  L++   + +Q +  +AS+G+ 
Sbjct: 272 EHLEKGMTLGRLGGDEFALLCEGYGAEKATALALRILDRLNESFHIGDQELFSSASIGIV 331

Query: 593 CAPLHG--VDPASLMKNAGLALHKAKANGKHQVQVFTEVLNAEASYKLFVENNLRRALTQ 650
             P      +   LM+NA  AL KAK++G+     ++E L ++A  ++ +   LR+AL Q
Sbjct: 332 LYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTSQARQRVELVTALRQALEQ 391

Query: 651 NELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMIRPDQFISVAEETGLIIPIGKWVVRQ 710
            +L + YQP   LR G + G EAL+RW HPE+G+I P  FI +AEETGLI  I  WV+ Q
Sbjct: 392 GQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPIAEETGLISAIDHWVLEQ 451

Query: 711 ACCMSQQLRKAGLGNLHVAINLSPKQFSDPDLVASISTILKEEALPPHLLELELTEGLLL 770
           AC  +++    G     +A+N+S + F + +L   ++TIL    L    LELE+TE  ++
Sbjct: 452 ACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILARSGLEARHLELEITESAVM 511

Query: 771 EASEDTHRQLDELKALGLTLAMDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDM 830
           +  +     L  L+ALG+ LA+DDFGTGYSSL  LK+  +  LKID+ F+  +PD++DD 
Sbjct: 512 QDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGFVRGLPDDRDDA 571

Query: 831 EITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRHRCDVGQGYLFDRPIP 879
            IT +V+ +AHNL LKVVAEGIET EQ AFL    CD GQGY F RP P
Sbjct: 572 AITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYGFARPQP 620