Pairwise Alignments

Query, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

 Score =  364 bits (934), Expect = e-104
 Identities = 221/568 (38%), Positives = 322/568 (56%), Gaps = 7/568 (1%)

Query: 326  FAQVITNHKRRAAASALHLFQRAV-EQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQ 384
            F  V+ N + R  A    L   AV   S     + +  G +  VNP+F+ IT Y   EV 
Sbjct: 732  FISVVENIQSRKEAELQLLLASAVFSNSMEGIFVTDLKGSILAVNPAFSQITLYEAAEVL 791

Query: 385  GRQLGELPALENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNREL 444
            GR    L +     E        +    SW+GE  +RR++ E +   LSIS V     E+
Sbjct: 792  GRNARILQSGRQNREFYVALWQDVLTIGSWRGEIWNRRRDGEVFPEWLSISSVRNHQGEV 851

Query: 445  THYIGIYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLD---ERFARDGESSMCLL 501
            T+YIGI+ D+++ K ++ +   LA+ D LT L NR      LD   ER  R G     +L
Sbjct: 852  TNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNRLLLRSRLDHAIERARRTG-GRCAVL 910

Query: 502  LVDIDNFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLEDG 561
             +D+D FK INDSLGH+ GD LL +L  RL   L   G LAR   +EF  +++D      
Sbjct: 911  FLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGDTGTLARLGGDEFVAVIEDIDGIPA 970

Query: 562  QG-VAQQLLCTLDKPMFV-DNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANG 619
             G +A  +L  L +P  + +   + +  SVG++  P  G +P +L+++A  AL + K  G
Sbjct: 971  VGTIALTMLERLREPCRLSEGPEVCIGGSVGISLFPEDGDNPDTLLQHADTALGQVKGAG 1030

Query: 620  KHQVQVFTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNH 679
                  +T  L    S +L +E  LR AL Q +  + YQP + L +G + G+EAL+RW  
Sbjct: 1031 GGAYGFYTRTLTERISARLGLEAGLRHALEQGDFLLHYQPLIALGTGEVEGVEALVRWAG 1090

Query: 680  PERGMIRPDQFISVAEETGLIIPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSD 739
             +  +I PD+FI +AE+TGLI+P+G+WV+ +AC   Q+ R  G+    +A+NLSP+QF D
Sbjct: 1091 GDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACRTMQRWRSQGMPLTVLAVNLSPRQFRD 1150

Query: 740  PDLVASISTILKEEALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGY 799
              + A +  +L++  LP  +LELE+TE  ++E       Q+  LK LG+ LA+DDFGTGY
Sbjct: 1151 HAIPALVRRVLEQTGLPASVLELEITESAIMEQGAAAEAQMTGLKHLGVRLAIDDFGTGY 1210

Query: 800  SSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLA 859
            SSL+ L++FPID +KID+SF+ +IP +    EIT+ ++AM   LKL V+AEG+ET +QL 
Sbjct: 1211 SSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITATIIAMGRTLKLHVLAEGVETTDQLD 1270

Query: 860  FLRRHRCDVGQGYLFDRPIPGRELAERL 887
            FL R +CD  QGYLF RPI    L + L
Sbjct: 1271 FLSRKQCDSAQGYLFSRPITAAALEKWL 1298



 Score = 32.3 bits (72), Expect = 2e-04
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 321 ELADQFAQVITNHKRRAAA--SALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQY 378
           EL  +   +I +H+R+      +   F+   EQ+A     ++ DG    VN     I  Y
Sbjct: 603 ELLARADGLIADHRRKQMVLRESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGY 662

Query: 379 STDEVQGRQLGELPALENLSELLFDSPSSLA-MGNSWQGEFKSRRKNLEPYWGQLSISKV 437
             DE+      ++   ++L   L    + LA   +++  E +  RK  E  W  L++S V
Sbjct: 663 PPDELLTLSFQDITHPDDLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLV 722

Query: 438 YGDNRELTHYIGIYEDVTQTKLAQQRI 464
              +    ++I + E++   K A+ ++
Sbjct: 723 RDIHNAPAYFISVVENIQSRKEAELQL 749