Pairwise Alignments

Query, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1061 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  402 bits (1033), Expect = e-116
 Identities = 229/557 (41%), Positives = 317/557 (56%), Gaps = 3/557 (0%)

Query: 334  KRRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPA 393
            +R+A+ +AL    RAVEQS ++ ++ +  G +EYVNP F   T Y + EV G     L +
Sbjct: 498  ERKASEAALRKLSRAVEQSPASVIITDARGTIEYVNPQFEKSTGYRSWEVIGANPRILKS 557

Query: 394  LENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYED 453
                     +   +L  G  W+GE  +RRK+   YW   S+S V       TH + + ED
Sbjct: 558  GHIAEATYAEMWKTLNEGREWRGELHNRRKDGTLYWEYASLSPVKDRRGRTTHLLAVKED 617

Query: 454  VTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERF--ARDGESSMCLLLVDIDNFKRI 511
            +T  K  + R+ R A  D LT+L NR      L E    A    S + +L +D+D+FK +
Sbjct: 618  ITARKETENRLIRQANFDELTDLPNRSLCYSRLKEAIVEAEATASIVGVLFIDLDHFKNV 677

Query: 512  NDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTS-LEDGQGVAQQLLC 570
            NDSLGH  GDKLL ++A+RLR     G  L+R   +EF +LL D +  E G GVAQ +L 
Sbjct: 678  NDSLGHAVGDKLLTAVAQRLREVARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILT 737

Query: 571  TLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVL 630
             L  P  +D + I + AS+G+   P  G   A L++NA  A++ AK +G++ +  F+  +
Sbjct: 738  ALAPPFSIDGREIYMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAICFFSPEM 797

Query: 631  NAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMIRPDQF 690
               A+ +L +E  LR+AL   EL V YQP +     R +G EALLRW  P  G + P +F
Sbjct: 798  EIRAAQRLAIEGALRQALAHEELRVAYQPLVRTSDARPIGAEALLRWTSPTLGEVSPTEF 857

Query: 691  ISVAEETGLIIPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSDPDLVASISTIL 750
            I VAEETGLI+PIG WV+ QA   + +LR  G G   +A+N+S +QF   DL   +S  L
Sbjct: 858  IKVAEETGLIVPIGAWVLDQAVAEAARLRAEGYGAFQIAVNVSVRQFRGGDLAGLVSDTL 917

Query: 751  KEEALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYSSLSYLKKFPI 810
            K    P   LELELTE LLL+ +      L  L ALG+ L++DDFGTGYS+LSYLK FP 
Sbjct: 918  KRHDFPAAGLELELTESLLLDVTPAITTTLQSLSALGVRLSLDDFGTGYSALSYLKTFPF 977

Query: 811  DILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRHRCDVGQ 870
            DILK+DRSFI +I    D   +  A++AMA  L L  + EG+ET EQ AF R   CD+ Q
Sbjct: 978  DILKVDRSFIRDISSAPDSGALARAIIAMARGLGLATIVEGVETEEQCAFARAEDCDIMQ 1037

Query: 871  GYLFDRPIPGRELAERL 887
            G+LF + +   +L   L
Sbjct: 1038 GFLFGKAMTPADLRRML 1054