Pairwise Alignments

Query, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  373 bits (958), Expect = e-107
 Identities = 219/566 (38%), Positives = 321/566 (56%), Gaps = 14/566 (2%)

Query: 330 ITNHKRRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLG 389
           IT+HK  AA   L L     E S    ++ +  G +  V+ +FT IT YS DEV    LG
Sbjct: 277 ITSHK--AAQEQLELAANIFENSVEGVVITDASGNIIEVHGAFTEITGYSRDEV----LG 330

Query: 390 ELPALENLS---ELLFDSP-SSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELT 445
           E P + N     +  F+    SL     W GE  +RRK+   Y  QL+IS +YGD+ ++ 
Sbjct: 331 ENPRILNSGRHDKAFFERLWRSLLTNGKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVR 390

Query: 446 HYIGIYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE--RFARDGESSMCLLLV 503
           +++ ++ D++  K +++ + RL Y D LT L NR     +L++  R A   E+ + L+ +
Sbjct: 391 YFVAVFADISAQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFI 450

Query: 504 DIDNFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLEDGQG 563
           D+D FK INDS GH TGD +L+ +ARRL   L     LAR  S+EF  +L     +D   
Sbjct: 451 DVDLFKHINDSYGHVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSVS 510

Query: 564 V-AQQLLCTLDKPMFVDNQ-LINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKH 621
           +   +L    D P  +D++  + +TAS+G+A  P  G    +L++NA  A+H+AKANG++
Sbjct: 511 LMVSRLREAFDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRN 570

Query: 622 QVQVFTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPE 681
               +T+ L   +   L +++ L  A+ ++   + YQPKL L +G+ +G EALLRW  P+
Sbjct: 571 NYAFYTQSLTLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQ 630

Query: 682 RGMIRPDQFISVAEETGLIIPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSDPD 741
            G I P  FI VAE  GLI  IG WV++QA     Q    G     +++N++  Q     
Sbjct: 631 LGTISPAIFIPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFGRISVNVAGPQLQQKQ 690

Query: 742 LVASISTILKEEALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYSS 801
             A +  +L E  LPP  LELE+TE  ++         L +L  LG+ L++DDFGTGYSS
Sbjct: 691 FCAQVKRVLDEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSS 750

Query: 802 LSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFL 861
           L+YLK+ PI  LKID+SFI +IP + ++  I  AV+A+ H L L ++AEG+ETPEQ AFL
Sbjct: 751 LNYLKRLPIHKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFL 810

Query: 862 RRHRCDVGQGYLFDRPIPGRELAERL 887
               CD  QGYL+ +P    ELAE L
Sbjct: 811 EAAGCDQAQGYLYSKPRMVEELAEFL 836