Pairwise Alignments

Query, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  353 bits (905), Expect = e-101
 Identities = 196/538 (36%), Positives = 324/538 (60%), Gaps = 6/538 (1%)

Query: 342  LHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPALENLSELL 401
            L LF++A+E  +    +++ + R   VN +   I+Q +  +  G  L      E+ S  +
Sbjct: 867  LRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIGNLLTFELYPESFSNQI 926

Query: 402  FDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYEDVTQTKLAQ 461
                + L     W  E ++ R +   +  +L+I  +Y +  EL+HY+G++ D+++ K  +
Sbjct: 927  ---RTMLKQQGRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISRRKQQE 983

Query: 462  QRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLVDIDNFKRINDSLGHQTGD 521
            + + +L   D LT L NR     +L     +  E +  L+++D+DNFKRINDSLGHQ GD
Sbjct: 984  EELRKLTNNDLLTGLPNRSNLQVTLGNLVNK--EINHALMVLDLDNFKRINDSLGHQVGD 1041

Query: 522  KLLISLARRLRNSLHSGGILARFASNEFAVLLDDTS-LEDGQGVAQQLLCTLDKPMFVDN 580
            KLL  ++ R+++S+     + R   +EFA++LD TS +     +A +++   +    +DN
Sbjct: 1042 KLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDN 1101

Query: 581  QLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVLNAEASYKLFV 640
            + + +  SVG+   P    +  +L++ A +A++ AK+ G +  Q ++E LN  A  +L  
Sbjct: 1102 EQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLET 1161

Query: 641  ENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMIRPDQFISVAEETGLI 700
            EN +R  L ++  +V+YQPK+ L+ G + G+EAL+R NHP  G+I P+ FI +AEE GLI
Sbjct: 1162 ENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEENGLI 1221

Query: 701  IPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSDPDLVASISTILKEEALPPHLL 760
            + IG+ V+R+AC  +Q+ R+ GL    VA+NLS +QF+ PDL   I +IL+   LP   L
Sbjct: 1222 VEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHL 1281

Query: 761  ELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYSSLSYLKKFPIDILKIDRSFI 820
            ELE+TEG +++  E     + +L  +G++LA+DDFGTGYSSLSYLK+FPI  LKID++F+
Sbjct: 1282 ELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFV 1341

Query: 821  NEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRHRCDVGQGYLFDRPI 878
            ++I  +  D+++  +++ +AHN+ L VV EG+E   QL  LR   C+  QGY+F + I
Sbjct: 1342 DDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAI 1399