Pairwise Alignments

Query, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score =  101 bits (252), Expect = 2e-26
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 10/263 (3%)

Query: 33  VRLGVVNWTDVIATSAMAQVLLDGLGYQTKQTSASQQIIFAGIRDKRLDMFLGYWNPIMT 92
           ++ G+  W  V   S + +V+L+  GY  +       I +A + D  LD+ L  W P   
Sbjct: 36  IKFGLPPWPGVTVKSNVVKVILEEQGYNVELNQLDAGITYAKLADGDLDVSLAGWLPTTH 95

Query: 93  QTI-TPFVDANQFKVLDKPSLEDARATLAVPKYLYDKGLKTFADIHKFEKELGGKIYGIE 151
           +   T +   NQ +++   ++      LAVP Y Y+ G+++  D++  E+   GKI GIE
Sbjct: 96  EEYWTQY--GNQLEMVHV-NVGKTALGLAVPTYTYEAGIQSITDLNGNEELFDGKIIGIE 152

Query: 152 PGSGANTQIKAMITKNQFDLGKFQLVESSEAGMLAAVDRAVRRKEAVVFFGWAPHPMNVN 211
           PG+G  +  +  I  + + L  ++L  SS   M+A + RA+   E +V   W PH +   
Sbjct: 153 PGAGIMSNTEKAI--DSYSLSGYELQSSSTPAMMAELARAINEDENIVVTVWEPHSVFFK 210

Query: 212 IDMAYLGDSQDALGPDEGRATVWTVTAPDYAERCPNALRLLANLKFSAEDESRMMQPLLD 271
            D+  L D +   G  +    V+T+   D+ +  P         +     +S  +    D
Sbjct: 211 FDIKMLDDPEKVYGDGD---KVYTIARTDFKDDYPEVYEFFQKFEVDPSVQSEWIYKYSD 267

Query: 272 H-KDALESARQWLKDHPEDKARW 293
              D  E A +W+ ++PE    W
Sbjct: 268 EGMDPEEVAEEWVANNPELVENW 290