Pairwise Alignments

Query, 368 a.a., AraC-family transcriptional regulator from Pseudomonas putida KT2440

Subject, 329 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

 Score =  121 bits (304), Expect = 2e-32
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 17/285 (5%)

Query: 51  YRWHTLTIDGGQVWASDGLQITPDA--AISNAPPIDTVIVCGGVGIQRSVTREH----VT 104
           Y    L    G V  S GL++  DA  A+ +   +DT++V GGVG+    +++H    + 
Sbjct: 43  YELMLLAASVGPVATSAGLKLVADASWAVCDPATLDTLLVPGGVGVN---SQKHDQPLLD 99

Query: 105 WLQAQARQSRRLGAVCTGSWALACAGLLDGFDCSVHWECLAAMQEAFPRVNMS-TRLFTL 163
           WL+A   + RRLG+VC+G+  LA AGL DG   + HW  LAA+   +P + +   RL T 
Sbjct: 100 WLRAAEPRVRRLGSVCSGALILAEAGLFDGRKATTHWADLAALG-TYPAIEVQGDRLHTY 158

Query: 164 D------RNRFTSSGGTAPLDMMLHLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLK 217
           D       + F+S+G TA +D+ L L+  D GR L+ ++++  V    R     Q  P+ 
Sbjct: 159 DPTDPQAAHLFSSAGVTAGIDLALALVEADLGRALALSVAQRLVMFLRRPGGQTQFSPML 218

Query: 218 HMLGTNQPKLQEIVALMEANLEEPIDLDELAVYVSVSRRQLERLFQKYLHCSPSRYYLKL 277
                   +L  ++  +  +L + + ++ LA    ++ R L RLF +     P +Y  ++
Sbjct: 219 TAPSGGVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTLCRLFSQETGMGPGQYIERV 278

Query: 278 RLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIPPRD 322
           RL  AR LL     SI  VA + GF    +  + ++++  + PRD
Sbjct: 279 RLEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSVSPRD 323