Pairwise Alignments

Query, 392 a.a., Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) from Pseudomonas putida KT2440

Subject, 348 a.a., sn-glycerol-3-phosphate import ATP-binding protein UgbC from Phaeobacter inhibens DSM 17395

 Score =  167 bits (424), Expect = 3e-46
 Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 28/304 (9%)

Query: 40  VVGVEKANLDINKGEICVLMGLSGSGKSSLLRCINGLNTVSRGKLFVEHEGKHIDIANCS 99
           V  V  ++  I  GE  VL+G SG GKS+LLR I GL  ++ G L +   G  + + N  
Sbjct: 17  VEAVTSSSFKIEDGEFVVLVGPSGCGKSTLLRMIAGLEDITEGTLEI---GDRV-VNNVD 72

Query: 100 AAELKMMRTKRIAMVFQKFALMPWLTVRENISFGLEMQGRPEKERRKLVDEKLELVGLTQ 159
            A+      + IAMVFQ +AL P +TVR+NI++GL+ +  PE E ++ V E  +++ L +
Sbjct: 73  PAD------RDIAMVFQNYALYPHMTVRKNIAYGLKNRKTPEAEIKQKVAEAAKMLNLEE 126

Query: 160 WRNKKPDELSGGMQQRVGLARALAMDADILLMDEPFSALDPLIRQGLQDELLGLQAKLSK 219
           + ++KP +LSGG +QRV + RA+  D  + L DEP S LD  +R  ++ E+  LQ +L  
Sbjct: 127 YLDRKPSQLSGGQRQRVAMGRAIVRDPALFLFDEPLSNLDAKLRNQMRIEIKALQRRLGV 186

Query: 220 TIVFVSHDLDEALKLGTRIAIMKDGRIIQYSKPEEIVLNPADEYVRTFVAHTNPLNVLCG 279
           T ++V+HD  EA+ +  RI ++  GRI Q   P EI  NPA  +V +F+    P+N+L  
Sbjct: 187 TSIYVTHDQVEAMTMADRIIVLNGGRIEQIGTPSEIYHNPASVFVASFMG-APPMNLL-- 243

Query: 280 RSLMRSLDNCKRVNGSVCLDPGID-SWLDLGEGGALKRARQGQNGLDMQKWAPGQ---DV 335
                   +    NG V L  G+    LD    GA+K    G    D+Q  A G    DV
Sbjct: 244 --------DATIANGQVTLPDGVSMGALDTSAQGAVK---LGIRPEDVQLVAEGGLAIDV 292

Query: 336 ELLE 339
           EL+E
Sbjct: 293 ELIE 296