Pairwise Alignments

Query, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

Subject, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (505), Expect = 6e-56
 Identities = 109/254 (42%), Positives = 158/254 (62%), Gaps = 9/254 (3%)

Query: 5   KKFLLAAAATLVMSANAMAAEK---LRMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAK 61
           KK+L+A A      +    A++   +R GIE AYPPF+  +A G++ GFD D+ +ALCA+
Sbjct: 4   KKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCAE 63

Query: 62  MKVECSVVTSDWDGIIPALNAKKFDFLVSSLSITDERKQAVDFTNPYYSNKLQFIAPKNV 121
           M+VEC +V  DWDGIIP+L A+K+D +++++SIT+ERK+ VDFT  Y     +FIA K  
Sbjct: 64  MQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKGA 123

Query: 122 DFKTDKESLKGKVIGTQRATLAGTYLEDNYPD-VEIKLYDTQENAYLDLVSGRIDGILAD 180
           D    KE LKG  IG QRAT    Y+ DNY D V+I  Y + + AYLDL +GRI  +L D
Sbjct: 124 DLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVLGD 183

Query: 181 KYVQYEWLKSKDGSN-FEFKGEPVMD----SDKIGIAVRKGDTKLRDDLNKALAEIKADG 235
                E + +K G + +EF G  + D     + +GIAVRK D +L + L+ A+  ++  G
Sbjct: 184 ASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALREKG 243

Query: 236 TYKKINDKYFPFSI 249
            Y++I  KYF + +
Sbjct: 244 IYQQIQAKYFKYDV 257