Pairwise Alignments

Query, 239 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

Subject, 240 a.a., two-component system response regulator OmpR from Vibrio cholerae E7946 ATCC 55056

 Score =  177 bits (448), Expect = 2e-49
 Identities = 106/229 (46%), Positives = 149/229 (65%), Gaps = 8/229 (3%)

Query: 5   LLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSL 64
           +LVVDDD  +R LL  YL++ G+ V + A+G+QM   L R    L+VLDLMLPGEDGLS+
Sbjct: 7   VLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLSI 66

Query: 65  CRQLQATPG-LAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRP--Q 121
           CR+L+ +   + ++ML+AKG  +DRI+GLEVGADDYL KPF PREL+ARIKAVLRR   +
Sbjct: 67  CRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVIE 126

Query: 122 RLGT-SAEEPMVDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSR 180
             G  SAEE +++   F  FRL    R + R + E + L   ++ VL+ L+      +SR
Sbjct: 127 APGAPSAEETIIE---FGEFRLNLGTREMFRGE-EAMPLTSGEFAVLKALVTNAREPLSR 182

Query: 181 DQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGTAQILTIRNEGYL 229
           D+L   A GR++   +RS+D+ +SRLR+ L   P+    I T+   GY+
Sbjct: 183 DKLMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYV 231