Pairwise Alignments

Query, 239 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

Subject, 275 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  201 bits (510), Expect = 2e-56
 Identities = 116/231 (50%), Positives = 149/231 (64%), Gaps = 4/231 (1%)

Query: 5   LLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSL 64
           +LVVDDD EIR LL  YL   G+   +AADG +M   L   + +LVVLD+MLPG+DGL+L
Sbjct: 7   ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLTL 66

Query: 65  CRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR----P 120
           CR+L+A   L VIML+A     DRIIGLE+GADDY+AKPF PREL+ARI+ VLRR    P
Sbjct: 67  CRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARALP 126

Query: 121 QRLGTSAEEPMVDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSR 180
           + +  +  E M     FAG+ L+ V R L  PDG  + L  ++YR+LR  L+  NRV+SR
Sbjct: 127 ENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVMSR 186

Query: 181 DQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGTAQILTIRNEGYLLS 231
           DQL     GR     DRS+D+ VSRLR +LR        I T+R +GY L+
Sbjct: 187 DQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLA 237