Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 418 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  460 bits (1183), Expect = e-134
 Identities = 241/439 (54%), Positives = 302/439 (68%), Gaps = 35/439 (7%)

Query: 7   SLVALAMIAATQ--AQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQIEWGQAFI 64
           S++ALA+ A T   A A+ Q++SKGF+ED+  ++LLRN Y NRD K G  D   WGQ FI
Sbjct: 7   SVIALAVAAGTSQMALASQQSESKGFVEDASLDLLLRNTYFNRDYKDGAGDVRSWGQGFI 66

Query: 65  ANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHNLA 124
             F SGFTQGT+GVGVDA+GL  VRLDGG+G+  G   +          + N     +L+
Sbjct: 67  TTFESGFTQGTIGVGVDAYGLLGVRLDGGRGYTYGAMFE---------RDSNGDPERDLS 117

Query: 125 RGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGRFT 184
           + GAA+K + SNTV+KYG+Q P++PVL YDD+RLLPESFTGTLITS EI+GLELNAGRFT
Sbjct: 118 QAGAAIKAQFSNTVIKYGNQFPSMPVLAYDDSRLLPESFTGTLITSNEIEGLELNAGRFT 177

Query: 185 QEARKSAERRDG-----GGLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVF 239
            ++      RD        LKSI+V+GG+Y F DN +ASLY ADNEDV KK Y  +NYV 
Sbjct: 178 ADSAMQTSSRDSLNYLDRTLKSIDVIGGTYAFNDNLSASLYYADNEDVAKKKYANINYVM 237

Query: 240 PIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLAHQRSTGS 299
           P A  QSL  DFN Y    +NKY K A       TIWSLAA Y+ G+H+F LAHQR TG 
Sbjct: 238 PFADAQSLAFDFNIY----DNKYDKQAFGETQDTTIWSLAAKYSVGSHAFILAHQRVTGD 293

Query: 300 TGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLA 359
             Y Y        +GDGG +I++ANSY+SDFN++DERSWQ  Y LDF  YG+PGL +K A
Sbjct: 294 GNYEY-------DIGDGGGSIWVANSYYSDFNSKDERSWQASYELDFSGYGVPGLFWKTA 346

Query: 360 YVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQN 419
           YV GDN++T       G GEGKERE FNQ++YVVQ GPAKDLS+KLR+S  R+N+ +++ 
Sbjct: 347 YVYGDNVDT-------GTGEGKEREFFNQVQYVVQSGPAKDLSLKLRNSIYRSNSDMREY 399

Query: 420 GYNDDGNEVRVFVEYPISI 438
            Y+ D NE+R FVEYP+SI
Sbjct: 400 -YSPDLNEIRAFVEYPLSI 417