Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 774 a.a., Transcription accessory protein (S1 RNA-binding domain) from Pseudomonas fluorescens FW300-N2E2

 Score = 1351 bits (3496), Expect = 0.0
 Identities = 680/774 (87%), Positives = 730/774 (94%)

Query: 88  MDSINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 147
           MDSINSRIAEELGVRPQQVEAAV+LLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY
Sbjct: 1   MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 60

Query: 148 LRELDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 207
           LRELDERR SIL+SI+EQGKLTP+L R+IKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
Sbjct: 61  LRELDERRISILASIQEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120

Query: 208 LGELADGLFNDPTLAPESEAARFVNAEKGVADVKAALEGAKYILMERFAEDAALLDKLRS 267
           LGELADGLFNDPTLAPE+EAARFV+AEKGVADVKAALEGAKYILMERFAEDA LL+KLR+
Sbjct: 121 LGELADGLFNDPTLAPETEAARFVDAEKGVADVKAALEGAKYILMERFAEDANLLEKLRN 180

Query: 268 YLKQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVLSVSLKVG 327
           YLKQEA LSARV+AGKEEEGAKFRDYF HDE L++ PSHRALAIFRGRNEG+LS +LKVG
Sbjct: 181 YLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG 240

Query: 328 EELPGTLHPCELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDSAE 387
           +ELPGT+HPCE MIG   GI+N++R ADKWL EVVRWTWKVKLYTHLETDL GELRD+AE
Sbjct: 241 DELPGTMHPCEGMIGQQFGIQNQNRAADKWLAEVVRWTWKVKLYTHLETDLLGELRDNAE 300

Query: 388 GEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKN 447
            EAINVFAHNLHDLLLAAPAGPRATLG DPGLRTGCK+AVVD+TGKLLDH TVYPH P N
Sbjct: 301 TEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHN 360

Query: 448 DWDRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKYPALKITKIMVSEAGASV 507
            WD+T++++AALCAKHSV+LIAIGNGTASRE+DKL  EL+KKYPA+K+TK+MVSEAGASV
Sbjct: 361 KWDQTLAVLAALCAKHSVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGASV 420

Query: 508 YSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 567
           YSASELA++EFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
Sbjct: 421 YSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 568 LDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRL 627
           LDAVVEDCVNAVGVDVNTASVALL RISGLNATLAQNIV HRD +G F TRAALKKV RL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVTHRDEHGAFKTRAALKKVPRL 540

Query: 628 GEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDP 687
           GEKTFEQAAGFLRVMNGDNPLD+SAVHPEAYPLVQRIAA TDRDIRSLIGD++FLKRLDP
Sbjct: 541 GEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAQTDRDIRSLIGDAAFLKRLDP 600

Query: 688 KKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVT 747
           KKFTDETFGLPTVTDILQEL+KPGRDPRPEFKTA FQDGVEDLKDL+PGMILEGVVTNVT
Sbjct: 601 KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVT 660

Query: 748 NFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 807
           NFGAFVDIGVHQDGLVHISALSEKF+KDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 808 DTPGEKVEGNRGGNRGNGGNRQQQAPRQRETATAAPANNAMAALFANAKQLKKK 861
           DTPGEKV+G RG   G+   + Q    ++E+ATAAP NNAMA+LFANAKQLKK+
Sbjct: 721 DTPGEKVDGARGARPGSTPRQTQNTAPRKESATAAPTNNAMASLFANAKQLKKR 774