Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 772 a.a., RNA binding S1 from Pseudomonas syringae pv. syringae B728a

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 685/774 (88%), Positives = 729/774 (94%), Gaps = 2/774 (0%)

Query: 88  MDSINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 147
           MDSINSRIAEELGVRPQQV AAV+LLDEGSTVPFI+RYRKEVTGSLDDTQLRHLEERLRY
Sbjct: 1   MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRY 60

Query: 148 LRELDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 207
           LRELDERR SIL+SIEEQGKLTPELAR+IKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
Sbjct: 61  LRELDERRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120

Query: 208 LGELADGLFNDPTLAPESEAARFVNAEKGVADVKAALEGAKYILMERFAEDAALLDKLRS 267
           LGELADGLFNDP+LAPE+EAARFV+A+KGVAD+KAALEGAKYILMERFAEDA+LLDKLRS
Sbjct: 121 LGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGAKYILMERFAEDASLLDKLRS 180

Query: 268 YLKQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVLSVSLKVG 327
           +LKQEAV+SARVV GKEEEGAKFRDYF HDE L++ PSHRALAIFRGRNEG LS +LKVG
Sbjct: 181 FLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG 240

Query: 328 EELPGTLHPCELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDSAE 387
           EELPG +HPCELMIG   GI+N++RPADKWL EVVRWTWKVKLY+HLETDL GELRD AE
Sbjct: 241 EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAE 300

Query: 388 GEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKN 447
            EAINVFAHNLHDLLLAAPAG RATLG DPGLRTGCK+AVVDATGKLLD+ TVYPH PKN
Sbjct: 301 TEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKN 360

Query: 448 DWDRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKYPALKITKIMVSEAGASV 507
            WD+TI+++AALCAKHSV+LIAIGNGTASRE+DKL  +L+KKYP LK+TK+MVSEAGASV
Sbjct: 361 QWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLIKKYPDLKMTKVMVSEAGASV 420

Query: 508 YSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 567
           YSASELAA+EFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
Sbjct: 421 YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 568 LDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRL 627
           LDAVVEDCVNAVGVDVNTASVALL RISGLN TLAQNIVAHRD NG F TRAALKKVSRL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRL 540

Query: 628 GEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDP 687
           GEKTFEQAAGFLRVM GDNPLDASAVHPEAYPLVQRIAA+TDRDIRSLIGD+SFLKRLDP
Sbjct: 541 GEKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP 600

Query: 688 KKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVT 747
           KKFTDETFGLPTVTDILQEL+KPGRDPRPEFKTA FQDGVEDLKDL+ GMILEGVVTNVT
Sbjct: 601 KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVT 660

Query: 748 NFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 807
           NFGAFVDIGVHQDGLVHISALSEKF+KDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 808 DTPGEKVEGNRGGNRGNGGNRQQQAPRQRETATAAPANNAMAALFANAKQLKKK 861
           DTPGEK++G RG   G+   RQ  APR +ET   APANNAMA+LFANAKQLKK+
Sbjct: 721 DTPGEKIDGARGARPGS-SPRQNNAPR-KETTAPAPANNAMASLFANAKQLKKR 772