Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

 Score = 68.9 bits (167), Expect = 8e-16
 Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 730 LKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVK 789
           L++L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K VK P E V  GD + VK
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244

Query: 790 VMEVDIPRKRVGLSMR 805
           V++ D  R RV L ++
Sbjct: 245 VLKYDRERTRVSLGLK 260



 Score = 52.0 bits (123), Expect = 9e-11
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 739 LEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFVKDPREAVKAGDVVKVKVMEVDIP 796
           L G VTN+T++G FV+I    +GLVH+S +  + K +  P + V  GD V+V V+++D  
Sbjct: 280 LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLDIDEE 338

Query: 797 RKRVGLSMRMSDT 809
           R+R+ L ++   T
Sbjct: 339 RRRISLGLKQCKT 351



 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 741 GVVTNVTNFGAFVDIGVHQDGLVHISALS-----EKFVKDPREAVKAGDVVKVKVMEVDI 795
           G + ++T+FG F+ +    DGLVH+S +S     E+ V D     K GD +   V+ VD 
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSD----YKKGDEISAVVLSVDP 424

Query: 796 PRKRVGLSMRMSD 808
            R+R+ L ++ ++
Sbjct: 425 ERERISLGVKQTE 437