Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 557 a.a., 30S ribosomal protein S1 from Klebsiella michiganensis M5al

 Score = 69.7 bits (169), Expect = 4e-16
 Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 730 LKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVK 789
           L++L+ GM ++G+V N+T++GAFVD+G   DGL+HI+ ++ K VK P E V  GD + VK
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244

Query: 790 VMEVDIPRKRVGLSMR 805
           V++ D  R RV L ++
Sbjct: 245 VLKFDRERTRVSLGLK 260



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 14/94 (14%)

Query: 736 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFVKDPREAVKAGDVVKVKVMEV 793
           G  L G VTN+T++G FV+I    +GLVH+S +  + K +  P + V  GDVV+V V+++
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDVVEVMVLDI 335

Query: 794 DIPRKRVGLSMRM-----------SDTPGEKVEG 816
           D  R+R+ L ++            +   G++VEG
Sbjct: 336 DEERRRISLGLKQCKNNPWQQFAETHNKGDRVEG 369



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 739 LEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAV---KAGDVVKVKVMEVDI 795
           +EG + ++T+FG F+ +    DGLVH+S +S     +  EAV   K GD +   V++VD 
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGE--EAVREYKKGDEIAAVVLQVDA 424

Query: 796 PRKRVGLSMR 805
            R+R+ L ++
Sbjct: 425 ERERISLGVK 434



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 728 EDLKDLE--PGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPRE-AVKAGD 784
           E LK +E  PG I+ GVV  +      VD G+  +  +     +E+F     E  ++ GD
Sbjct: 11  ESLKTIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIP----AEQFKNAQGELEIQVGD 66

Query: 785 VVKVKVMEVD 794
            V V +  V+
Sbjct: 67  EVDVALDAVE 76