Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  666 bits (1718), Expect = 0.0
 Identities = 353/625 (56%), Positives = 437/625 (69%), Gaps = 7/625 (1%)

Query: 9   LRMAALYVVLSILWLALAEVML-HSMTDDPLALTVGRQINVVVWVLLSALLIYVSRVRLL 67
           +R++  Y  L++LW+ L + ++ H    D  A  +G+    V   L SAL+  + R    
Sbjct: 6   VRLSLGYFSLAMLWILLGDTLVNHLAAGDSQAWQMGKGALFVA--LTSALIFLLGRQHFR 63

Query: 68  NFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIG 127
            F     R +      L+ AAAVFDST EGVLVTD +  IVHVN AF RITGY  +EV+G
Sbjct: 64  RF-DEQQRAQHVQETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLG 122

Query: 128 QRPSKFKSGHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELS 187
           Q P  F SG H   FYQ+++  L +KGEWSGEIWNRRK+GE+YPQWQ +  I D++G+LS
Sbjct: 123 QTPKLFASGKHDAEFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLS 182

Query: 188 HYVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLL 247
           HYVAVFSD+SA+K S +EL  LAH+DPL  LPNRLLFT+R +Q L  A+A+KR  ALLL+
Sbjct: 183 HYVAVFSDLSALKRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLI 242

Query: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAG 307
           DLDHF+ IN+ LGH++GD LL+ V  RL E L  G+TL RLGGDEF +L E      +A 
Sbjct: 243 DLDHFKDINESLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEG-YGAEKAT 301

Query: 308 KLAQCIIERMREPFQFDGNRLFISASVGISLYP--SDALGAEQLLRNADSALYKAKSNGR 365
            LA  I++R+ E F      LF SAS+GI LYP  +D   AEQL+RNADSAL+KAKS+GR
Sbjct: 302 ALALRILDRLNESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGR 361

Query: 366 ACYALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHP 425
           + YA Y+EELT+ A+ RVE    LR+ALEQ +LR+++QP++DL  G   G E LVRWQHP
Sbjct: 362 STYAFYSEELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHP 421

Query: 426 RRGLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQH 485
            +GL+ PG FIPIAE TGLI+ ID WVL QAC Q  +W  QG  L F+ VNISSRLFG  
Sbjct: 422 EKGLIAPGVFIPIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNG 481

Query: 486 ELYRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYS 545
           EL  QVA +L  +GL    LELE+TESAVM+DP+ ALE L RLR LGV LAIDDFGTGYS
Sbjct: 482 ELDLQVATILARSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYS 541

Query: 546 SLLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASF 605
           SL RLKR+ V KLKIDQGFV GLP D DD AI R +I LA ++G++V AEGIE AEQA+F
Sbjct: 542 SLQRLKRMNVHKLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAF 601

Query: 606 LLQEECQLGQGYWFGRPVPAEDLRW 630
           LL + C  GQGY F RP PA+ + W
Sbjct: 602 LLAQNCDYGQGYGFARPQPADAIDW 626