Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 917 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  431 bits (1107), Expect = e-125
 Identities = 219/550 (39%), Positives = 337/550 (61%)

Query: 79  EDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHH 138
           + ++RL++     +++   +L+T  +G+I +VN AF  +TGY  DEVIG+ P   KSG  
Sbjct: 354 QTQQRLKLLQEATENSPASILITSAEGIIEYVNPAFELMTGYGADEVIGKNPRFLKSGLM 413

Query: 139 GLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISA 198
             +FYQ+++ T+     W GE++NRRK+GE++    +I  ++D  G++ H+VAV  DI+ 
Sbjct: 414 SPSFYQDLWETITAGETWRGELYNRRKTGELFWDRTSISPVKDLAGQIIHFVAVKEDITE 473

Query: 199 IKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDG 258
            K + + L + A++D LT LPNR L  DRL QA A ++ +     ++LLDLD F++IND 
Sbjct: 474 QKRNRELLDHQANYDSLTDLPNRSLALDRLRQATALSERSNDTVIVMLLDLDRFKNINDT 533

Query: 259 LGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMR 318
           LGH+ GD LL+ + +RL   L   +T++RLGGDEF ++    ++     KL+Q +++ + 
Sbjct: 534 LGHSYGDCLLQEIAKRLRYHLPREITISRLGGDEFLIICPAVKENIHLEKLSQQLLKIIS 593

Query: 319 EPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAH 378
           +P   +   L I+AS+G++ YP+D +  E L+RNAD+A+Y AK NG   + L+   + A 
Sbjct: 594 QPITIEAEELVITASIGVACYPNDGVTPEVLMRNADTAMYSAKRNGGNDFQLFMPTMNAE 653

Query: 379 AQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPI 438
           A  R++    LR ALEQ +L+V++QP+  L     VG+E L RW  P  G +PP  FIPI
Sbjct: 654 AHARIQLETHLRHALEQYQLKVFYQPIISLQDNHVVGLEALARWHDPELGNIPPDRFIPI 713

Query: 439 AERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDT 498
           AE TGLI  +   V+ QAC+ +  WQ +     +V VN+S R    +   +  A++L   
Sbjct: 714 AEETGLIIPLGYRVIEQACQDVAIWQQKYNYPFWVAVNLSPRQLRSNRFTQITAKILQRH 773

Query: 499 GLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKL 558
              P  L+LEVTE  ++++     + L  L   G+ LA+DDFGTGYS+L  L+R P Q L
Sbjct: 774 NFRPNYLKLEVTEQMLLDNTSTIAQMLDTLHRKGIALALDDFGTGYSALSYLRRYPFQSL 833

Query: 559 KIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYW 618
           K+DQ F+  +P   +  A+V+ I+A+A  +GMQ  AEG+E AEQ  FL    C+ GQGYW
Sbjct: 834 KVDQSFLRDIPHSTESCALVKTIVAMAHGLGMQAVAEGVETAEQVEFLKAIGCEYGQGYW 893

Query: 619 FGRPVPAEDL 628
           F RP+PA ++
Sbjct: 894 FSRPLPAVEI 903



 Score = 26.2 bits (56), Expect = 0.007
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 25/154 (16%)

Query: 57  LLIYVSRVRLLNFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMR 116
           LL  V  +R +    H   L  +   R ++   + +S   G+LV D QG ++  N     
Sbjct: 233 LLSLVGNIRDITEEHHILSLVQDSETRFQV---LIESNPNGILVLDEQGAVLFAN----- 284

Query: 117 ITGYQQDEVIGQRPSKFKSGHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYP-QWQT 175
              +  ++V  Q  S+ +  + GL     V   L +  +  G +  R     I P  WQ 
Sbjct: 285 ---HVAEQVFDQSLSELQGKYLGLPLTLNVTVQL-DLVQPDGSL--RYVEVSIVPIPWQ- 337

Query: 176 ICAIRDDEGELSHYVAVFSDISAIKHSEQELAYL 209
                    +   Y+A+ +DI++++ ++Q L  L
Sbjct: 338 ---------QSKAYLALLTDITSLQQTQQRLKLL 362