Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  429 bits (1103), Expect = e-124
 Identities = 230/546 (42%), Positives = 324/546 (59%), Gaps = 1/546 (0%)

Query: 79  EDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHH 138
           + +E +R+   VF S  EG+++ +R   +  VN AF  +TG  + ++ G+    F SG H
Sbjct: 282 QSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLH 341

Query: 139 GLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISA 198
              F   V A +   G W GEIW  R+ G  Y    T+ A+R   GE +HYVA  +DI+ 
Sbjct: 342 ENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITK 401

Query: 199 IKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDG 258
            K  E+ + + A+ D LT LPNR L  DRLEQA+  AQ   R   ++ LDLD F+ IND 
Sbjct: 402 RKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDS 461

Query: 259 LGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMR 318
            GH+ GD++LKL   RL   +    ++ RLGGDEF V++ N +       +A+ I+  + 
Sbjct: 462 YGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLS 521

Query: 319 EPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAH 378
           EPF   G  +F   SVGI+ +P     A  LLRNAD A+Y AK  G   YA++T ++   
Sbjct: 522 EPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARR 581

Query: 379 AQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPI 438
           +   +   ++LR AL +DE  ++FQP    A    +G E L+RW+HP +GL+ PG+FIP+
Sbjct: 582 SLALLTMESDLRHALARDEFELHFQP-KVRADLTLIGAEALIRWRHPEKGLINPGDFIPL 640

Query: 439 AERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDT 498
           AE +GLI  I  W LR+AC +++ W+A+G  +  V VN+S R F    L   V ++L +T
Sbjct: 641 AEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVET 700

Query: 499 GLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKL 558
           GL P  L+LE+TE+ +  D E A+  L  L++LGVTL+IDDFGTGYSSL  LK  P+  L
Sbjct: 701 GLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTL 760

Query: 559 KIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYW 618
           KIDQ FV  +     D AIV  IIALAR++G  V AEG+E+ EQA FL   +CQ  QG+ 
Sbjct: 761 KIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFL 820

Query: 619 FGRPVP 624
           + RP+P
Sbjct: 821 YSRPLP 826



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 11/157 (7%)

Query: 57  LLIYVSRVRLLNFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMR 116
           LL+ ++R          A    E + R     A+F++ +EG+  +   G  + VN A  R
Sbjct: 141 LLVVITRDMTAQVAAENALRAAEGKYR-----AIFENAVEGIYQSTPDGTYLDVNPALAR 195

Query: 117 ITGYQQD-EVIG---QRPSKFKSGHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQ 172
           I GY    E+I       S+          +Q +     E  +++ E+W  R  G     
Sbjct: 196 IYGYASPAELIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVW--RCDGHTIWI 253

Query: 173 WQTICAIRDDEGELSHYVAVFSDISAIKHSEQELAYL 209
            +    +R  + E+ +Y     DI+A + S++ +  L
Sbjct: 254 TENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLL 290



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 86  MAAAVFDSTLEGVLVTD---RQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAF 142
           ++AA+F S +E + V     R G+IVH N       G   D +IG   + + +    LA 
Sbjct: 36  LSAALFQSVVEALPVGTALLRDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPADALAV 95

Query: 143 YQEVFATLAEKG 154
            + V   +A  G
Sbjct: 96  QKVVEGAIALHG 107