Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  397 bits (1019), Expect = e-114
 Identities = 214/544 (39%), Positives = 313/544 (57%), Gaps = 1/544 (0%)

Query: 84  LRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAFY 143
           +R+ +A   +    +++TD +G +  VN A+  ++GY++D++IG  P+            
Sbjct: 318 MRLQSAAIAAAANAIVITDGEGRVEWVNEAYHLLSGYERDQIIGTLPAVLAGPSAANPTA 377

Query: 144 QEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAIKHSE 203
            E + TL     W GEI    + G  Y   +TI  I D  G LSH VAV  D++A K +E
Sbjct: 378 IEAWPTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAE 437

Query: 204 QELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDGLGHTI 263
           + + YL+++D LT LPNR+LF DRL QA+  A+    G A++ +DLD F  +ND LGH  
Sbjct: 438 ERIRYLSNYDTLTRLPNRVLFRDRLYQAVVQARRGHGGLAVMFIDLDQFSLVNDTLGHAA 497

Query: 264 GDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMREPFQF 323
           GD LL  +  R+        T+AR+GGDEF ++         A  LA+ +I+ +R P   
Sbjct: 498 GDHLLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDVIRTPVDL 557

Query: 324 DGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAHAQHRV 383
            G  + I A+VGI++YP D    + L++NAD A+Y+A  +G      ++ E+ A A  R+
Sbjct: 558 GGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSNEMNAEAAVRL 617

Query: 384 ETAAELRRALEQ-DELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPIAERT 442
               +LRRAL+  D+L +++Q    + SGR VG E L RW HP  G +PP  FIP+AE +
Sbjct: 618 SLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPVAEDS 677

Query: 443 GLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDTGLAP 502
           GLI  +  WVL  A  +  +W+A G     + VN+S+  F Q  L  +V ++L   G+ P
Sbjct: 678 GLILALGDWVLGTALAEYARWRAAGCGRLTIAVNMSAVQFRQKGLVERVTDLLAQHGVPP 737

Query: 503 ALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKLKIDQ 562
             LELE+TES +M+D + A+ QL  L + G+ L+IDDFGTGYSSL  LK   V KLK+DQ
Sbjct: 738 EDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKLKVDQ 797

Query: 563 GFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYWFGRP 622
            FV  +  D +D  I R II L  S+G++V AEG+E  EQ ++L +E C + QGY    P
Sbjct: 798 SFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYLMAYP 857

Query: 623 VPAE 626
            P E
Sbjct: 858 EPGE 861



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 51  WVLLSALLIYVSRVRLLNFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHV 110
           W  L         + +L  +    + +  DR R R  A +F    +G++V D  G +  +
Sbjct: 9   WAALLTAATTAGAITILVALVRRNQAKGPDR-RAREDAEIFLGLSDGLIVLDDGGRVSAL 67

Query: 111 NRAFMRITGYQQDEVIGQRPSKFKSG 136
           NRA  R+TG + +  +G+   +   G
Sbjct: 68  NRAAQRMTGQEGEAAVGKSARRLLPG 93