Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 764 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  392 bits (1007), Expect = e-113
 Identities = 225/561 (40%), Positives = 324/561 (57%), Gaps = 3/561 (0%)

Query: 66  LLNFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEV 125
           ++ F+   AR R  +   ++++ AV  S+   +++TD  G I + N AF +I+GY   E 
Sbjct: 171 MVTFVDITAR-RESEAAVIKLSHAVEQSSAS-IVITDADGRIEYANPAFTKISGYTAQEA 228

Query: 126 IGQRPSKFKSGHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGE 185
           IG+RPS  KSG      Y+ ++ T+   GEW GE  NRRK G +Y +  +I  IRD  G+
Sbjct: 229 IGRRPSILKSGLVPAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGK 288

Query: 186 LSHYVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALL 245
           ++++VAV  D++  K  E EL + A++D LTGLPNR L  DR+  AL  A+ + R  A++
Sbjct: 289 ITNFVAVKDDVTERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVAVM 348

Query: 246 LLDLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQ 305
            +D+D F+ IND +GH  GD LLK    RL  VL    TL RLGGDEF V+    +   +
Sbjct: 349 FMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESE 408

Query: 306 AGKLAQCIIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGR 365
           A  LA  ++E  R PF  DG  +++S S+G+SL P D   A+ L+RNAD+A+Y AK  GR
Sbjct: 409 ATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGR 468

Query: 366 ACYALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHP 425
                +T ++ A A+ R+     LR A+    L +  QP+   A    +  E L+RW HP
Sbjct: 469 DAAHFFTPDIEAAARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHP 528

Query: 426 RRGLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQH 485
           + G VPP EFIPIAE +GLI  I  WV+ +A R +V           +G+NI+S  F   
Sbjct: 529 QLGGVPPSEFIPIAEESGLIRAIGAWVIEEAARLLVSLDPPRDGAFRLGINIASSQF-TG 587

Query: 486 ELYRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYS 545
            L+  VA +L    L P +LE+E+TE  +++     LEQ+  LR +GV++AIDDFGTGYS
Sbjct: 588 GLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAIDDFGTGYS 647

Query: 546 SLLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASF 605
           +L  L    V  LKID+ FV+ +  +    A++  I+AL   +G  V AEG+E A+QA  
Sbjct: 648 ALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARL 707

Query: 606 LLQEECQLGQGYWFGRPVPAE 626
           L +      QGY+ GRP  AE
Sbjct: 708 LGELAVDALQGYFLGRPTTAE 728



 Score = 43.9 bits (102), Expect = 3e-08
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 52  VLLSALLIYVSRVRLLNFIGHGARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVN 111
           V+   L +++S   LL  + HG R+      + R  AA+ D+  EG  V D    IV  N
Sbjct: 5   VVFPGLCVFLSAGLLLALV-HGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMAN 63

Query: 112 RAFMRITGYQQDEVIG 127
            A  RI GY QD++IG
Sbjct: 64  AAAGRILGYTQDDLIG 79