Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1061 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  409 bits (1050), Expect = e-118
 Identities = 222/546 (40%), Positives = 318/546 (58%)

Query: 84   LRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAFY 143
            LR  +   + +   V++TD +G I +VN  F + TGY+  EVIG  P   KSGH   A Y
Sbjct: 506  LRKLSRAVEQSPASVIITDARGTIEYVNPQFEKSTGYRSWEVIGANPRILKSGHIAEATY 565

Query: 144  QEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAIKHSE 203
             E++ TL E  EW GE+ NRRK G +Y ++ ++  ++D  G  +H +AV  DI+A K +E
Sbjct: 566  AEMWKTLNEGREWRGELHNRRKDGTLYWEYASLSPVKDRRGRTTHLLAVKEDITARKETE 625

Query: 204  QELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDGLGHTI 263
              L   A+ D LT LPNR L   RL++A+  A+A      +L +DLDHF+++ND LGH +
Sbjct: 626  NRLIRQANFDELTDLPNRSLCYSRLKEAIVEAEATASIVGVLFIDLDHFKNVNDSLGHAV 685

Query: 264  GDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMREPFQF 323
            GD+LL  V +RL EV   G TL+R GGDEF +L+ +         +AQ I+  +  PF  
Sbjct: 686  GDKLLTAVAQRLREVARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILTALAPPFSI 745

Query: 324  DGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAHAQHRV 383
            DG  ++++AS+GI+ +P D   A +LLRNADSA+Y AK +GR     ++ E+   A  R+
Sbjct: 746  DGREIYMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAICFFSPEMEIRAAQRL 805

Query: 384  ETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPIAERTG 443
                 LR+AL  +ELRV +QP+   +  R +G E L+RW  P  G V P EFI +AE TG
Sbjct: 806  AIEGALRQALAHEELRVAYQPLVRTSDARPIGAEALLRWTSPTLGEVSPTEFIKVAEETG 865

Query: 444  LIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDTGLAPA 503
            LI  I  WVL QA  +  + +A+G     + VN+S R F   +L   V++ L       A
Sbjct: 866  LIVPIGAWVLDQAVAEAARLRAEGYGAFQIAVNVSVRQFRGGDLAGLVSDTLKRHDFPAA 925

Query: 504  LLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKLKIDQG 563
             LELE+TES +++        L  L  LGV L++DDFGTGYS+L  LK  P   LK+D+ 
Sbjct: 926  GLELELTESLLLDVTPAITTTLQSLSALGVRLSLDDFGTGYSALSYLKTFPFDILKVDRS 985

Query: 564  FVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYWFGRPV 623
            F+  +    D  A+ R IIA+AR +G+    EG+E  EQ +F   E+C + QG+ FG+ +
Sbjct: 986  FIRDISSAPDSGALARAIIAMARGLGLATIVEGVETEEQCAFARAEDCDIMQGFLFGKAM 1045

Query: 624  PAEDLR 629
               DLR
Sbjct: 1046 TPADLR 1051



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 36  DPLALTVGRQI----NVVVWVLLSALLIYVSRVRLLNFIGHGARLRCEDRERLRMAAAVF 91
           +P   T+ R +     V  ++LL+ALL+    V       +  R    +RE +R   A+ 
Sbjct: 286 EPALETIRRSLIISATVTAFLLLAALLLLAQLV-------NSRRALLREREDMR---AIT 335

Query: 92  DSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHG 139
           D+  EG+ + D +GLI  VNR+   + GY +++++G +       H G
Sbjct: 336 DTMGEGLYILDNEGLIAFVNRSAETMLGYSREDLLGAKAHSLFHSHDG 383