Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  374 bits (959), Expect = e-107
 Identities = 217/559 (38%), Positives = 325/559 (58%), Gaps = 10/559 (1%)

Query: 74  ARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKF 133
           ++L  E+R    M  A+ D+    V+ TD + +I  +N    R+TG+   + IG    + 
Sbjct: 256 SQLDTENRRLKIMLNAIGDA----VIATDSEAMITFMNPIAERLTGWVCRDAIGLHIEQV 311

Query: 134 KSGHHGLAFYQE---VFATLAEKGEWSGEIWNRRKS--GEIYPQWQTICAIRDDEGELSH 188
                    Y+    V   + EK   +  +  +  S  G  +    +   I D EG+++ 
Sbjct: 312 MDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQLNSLDGTTFQIEDSAAPITDSEGKVTG 371

Query: 189 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLD 248
            + VF D S       ++++LA+HD LT LPNR+L  DR+  A A A +  +  AL+L+D
Sbjct: 372 GIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHACAVADSYDKSVALMLID 431

Query: 249 LDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGK 308
           +DHF+ +ND LGH+ GDQ++K V +RL  ++    TL R+GGDEF +L+ +     Q   
Sbjct: 432 IDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGGDEFVLLLPSLTATSQVDS 491

Query: 309 LAQCIIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACY 368
           +A  I+  +  PF+ DG    +S SVGIS+YPSDAL AE+L+ + D+A+Y+AK  GR  +
Sbjct: 492 IATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDALRAEELMTHVDAAMYRAKDLGRNRF 551

Query: 369 ALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRG 428
             ++E+L      R E    LR A++ + + VY+QP  DL +   +G E L R   P   
Sbjct: 552 CYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQPKVDLKTKEIIGAEALARLYDPSGK 611

Query: 429 LVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELY 488
           L+ P +FIP+AE TGLI ++   +L+Q+C     WQ +GR L  + VNI+++ F   E  
Sbjct: 612 LISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQKRGRPLQ-IAVNIAAKQFTNPEFC 670

Query: 489 RQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLL 548
             VA+VL  TGL  + LELEVTES++M D + AL  L+ L  LG+++AIDDFGTGYSSL 
Sbjct: 671 DSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNVLNTLSSLGLSIAIDDFGTGYSSLS 730

Query: 549 RLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQ 608
            LK  PV  LKIDQ FV  +  DE  + IV+ +I LA+S+ +++ AEGIE AEQ   L+ 
Sbjct: 731 YLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHLAKSLKLKLIAEGIEDAEQLQKLVA 790

Query: 609 EECQLGQGYWFGRPVPAED 627
            EC+ GQGY F +P+P ++
Sbjct: 791 LECEQGQGYMFSKPLPLKE 809