Pairwise Alignments

Query, 448 a.a., putative membrane bound peptidase, nefD from Pseudomonas putida KT2440

Subject, 478 a.a., membrane protein necessary for nodulation competitiveness from Sinorhizobium meliloti 1021

 Score =  401 bits (1030), Expect = e-116
 Identities = 225/456 (49%), Positives = 302/456 (66%), Gaps = 24/456 (5%)

Query: 9   LLLLLLLGITPGGQAAPGA---VWVLNIDDAIGPASADYLVRSLGQAQAQGAQLVVIRMD 65
           LL      +TP     PGA     VL+++ AI PA+A+Y+ R L QA+ +GA LVV++MD
Sbjct: 29  LLSAFAFPVTP----VPGAERTALVLHVNGAISPAAAEYVTRGLQQARDRGAALVVLQMD 84

Query: 66  TPGGLDSAMRQMIKAILSSTVPVASYVAPSGARAASAGTYILYASHIAAMAPGTNLGAAT 125
           TPGGLD++MR +I+AIL S VPVAS+V+PSGARAASAGTYILYASHIAAMAPGTNLGAAT
Sbjct: 85  TPGGLDTSMRDIIRAILDSPVPVASFVSPSGARAASAGTYILYASHIAAMAPGTNLGAAT 144

Query: 126 PVRIGGA------------PGTPSDDKAKGGDDETLARKQVNDAAAYIRGLAQMRGRNAD 173
           P+ IGG             PG P   + +   +   A K +NDA AYIRGLA++R RN D
Sbjct: 145 PIAIGGGLFGNDEQEGEEKPGDPDKPEPRKPANAGEA-KLINDAVAYIRGLAELRNRNVD 203

Query: 174 WAEKAVREAVSLSASEALRLNVIDQVADDLPDLLRKLDGKTLQVAGQPRQLQTAGASVVE 233
           WAE+AVREA SLS++ A R  VID  A  + DLL++  G+ +++     +L T+G ++ +
Sbjct: 204 WAERAVREAASLSSAAAAREQVIDFTAVSVDDLLKQAHGRAVRIGQSDVRLDTSGLAIED 263

Query: 234 HLPDWRTRFLAVITNPSVALILIMIGVYGLLFEFMNPGSAVGGVVGGICLLLALYALQLL 293
             PDWRTR L+VITNP+VAL+L+M+G+YGL+FEF+ PG+ V G +GGI LLL LYAL +L
Sbjct: 264 LPPDWRTRLLSVITNPNVALLLMMVGIYGLIFEFLAPGTVVPGTIGGISLLLGLYALAVL 323

Query: 294 PVSFAGVALILLGITFMIAEAFLPSFGVVGFGGIVAFVVGALILIDTDAPGFGIPLALIG 353
           PVS+AGV LILLG   ++AEA  PSFGV+G GG VA V+GA IL DTD PG  +    + 
Sbjct: 324 PVSYAGVGLILLGAGLLVAEAHAPSFGVLGLGGTVALVLGAAILFDTDMPGLQVSWPALS 383

Query: 354 TLALLSALLIGGVLGMALKARQRALVSGDAGLVGSLVTVTQVMASDPFCGVVLAQGEQWQ 413
            +A+ S      V  +AL +R+  + +G   ++G    V     +D   G V+A GE+W+
Sbjct: 384 GIAIASLAFSLLVARLALVSRRHKVATGAEEMIGISGKVDSWAGAD---GYVIAHGERWR 440

Query: 414 VQCATPLQTGQNVRVTARHGVMLEVSA-AAPATQGE 448
              +  L  G++V V  R G+ L+V+  AAP   G+
Sbjct: 441 AVSSESLGPGEDVMVVGREGLTLKVARNAAPGGDGD 476