Pairwise Alignments

Query, 448 a.a., putative membrane bound peptidase, nefD from Pseudomonas putida KT2440

Subject, 500 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  345 bits (885), Expect = 2e-99
 Identities = 205/481 (42%), Positives = 285/481 (59%), Gaps = 50/481 (10%)

Query: 9   LLLLLLLGIT-------------PGGQAAPGAVWVLNIDDAIGPASADYLVRSLGQAQAQ 55
           LLLLLL+ ++                Q  P  + +L    AIGPA  +YL   +  A   
Sbjct: 15  LLLLLLIALSLDKSVSAAEENSESAQQTTPQPIPLLQFSGAIGPAIGEYLSEEIDHANRL 74

Query: 56  GAQL----VVIRMDTPGGLDSAMRQMIKAILSSTVPVASYVAPSGARAASAGTYILYASH 111
            A+L    ++I +DTPGGL +++R + +AIL+S +P+A  VAP GARA SAGTY+LYA H
Sbjct: 75  PAELRPELIMIVLDTPGGLVTSLRSINQAILASKIPIACLVAPPGARAMSAGTYMLYACH 134

Query: 112 IAAMAPGTNLGAATPVRIG---------GAPGTPSDDKAKGGDD---------------- 146
           IAAMAP T LGAATPV++G            G+ SD K  G  D                
Sbjct: 135 IAAMAPATTLGAATPVQLGMPSSPQDSGSGSGSGSDPKESGSQDKAAQKDGAGQSTPEST 194

Query: 147 -----ETLARKQVNDAAAYIRGLAQMRGRNADWAEKAVREAVSLSASEALRLNVIDQVAD 201
                + +A K +NDA AYIR LA +RGRN ++AE+AV +A +L++ EAL  NVID +A 
Sbjct: 195 PKDNKDAMAHKVLNDAVAYIRSLANLRGRNVEFAERAVIDAATLTSDEALAQNVIDLIAA 254

Query: 202 DLPDLLRKLDGKTLQVAGQPRQLQTAGASVVEHLPDWRTRFLAVITNPSVALILIMIGVY 261
           D  +L+ KL+G ++ V G+ ++L  AGA++      WR R +A IT+P++A IL++IG+Y
Sbjct: 255 DPQELVAKLEGFSVVVDGKAKRLSLAGANLAPRQQSWRNRVIATITDPNIAYILMLIGIY 314

Query: 262 GLLFEFMNPGSAVGGVVGGICLLLALYALQLLPVSFAGVALILLGITFMIAEAFLPSFGV 321
           GLL EF +PG  V GV GGI LL+ALYA QLLPV++AG+ LILLGI  ++AE+ +PSFG+
Sbjct: 315 GLLLEFYSPGIGVAGVTGGIALLVALYAFQLLPVNYAGLGLILLGIALIVAESMVPSFGI 374

Query: 322 VGFGGIVAFVVGALILIDTDAPGFGIPLALIGTLALLSALLIGGVLGMALKARQRALVSG 381
           +G GGI AF +G+L LID +     I L LI  + + ++     VL    KAR+ A VSG
Sbjct: 375 LGLGGIAAFALGSLFLIDAEGGDLSISLPLIAAVTVTASGFSLWVLSSLWKARKAANVSG 434

Query: 382 DAGLVGSLVTVTQVMASDPFCGVVLAQGEQWQVQCATPLQTGQNVRVTARHGVMLEVSAA 441
           D  L+G+   V +        G+V   GE WQ +  +  QTG+ V V  R  + L V+ A
Sbjct: 435 DDLLIGASARVVKGFEK---YGLVTLGGECWQARSDSQTQTGETVIVLGRDKLTLIVTPA 491

Query: 442 A 442
           A
Sbjct: 492 A 492