Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 474 a.a., RND efflux system, outer membrane lipoprotein CmeC from Xanthomonas campestris pv. campestris strain 8004

 Score =  219 bits (559), Expect = 1e-61
 Identities = 156/480 (32%), Positives = 244/480 (50%), Gaps = 27/480 (5%)

Query: 1   MKQLILAGLCLSLGACMMVGPDYEVPGDAAVQRNDLNGPLRQDADSVVSAPVPEDWWQLY 60
           ++ L+ A L  ++ +   VGPDY     AAV    L G   QDA     +PV  +WW  +
Sbjct: 2   VRTLLGAALAAAILSGCAVGPDYRPEPPAAVT---LQGA--QDAAYSAESPVG-NWWSQF 55

Query: 61  QDQRLNELVRQALSANTELRVAAANIAKARA--------QVEVAESQGGFNGGVKLGAQR 112
            D  L +LVR AL AN +LR+A + + +ARA        Q     +QG F+   +   Q+
Sbjct: 56  DDPVLEQLVRDALFANHDLRIAVSRVKQARAVFVERRLDQAPHITAQGSFD---RREQQQ 112

Query: 113 LQESGEAFLQPEKVPVANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARIT 172
           +    + FL  +      +G   + A+++ DL+G  +R +EAA+A+ +A QA     ++T
Sbjct: 113 VIAGNQRFLTEQ----TTLG---LDAAWELDLFGRQRRASEAARADLEAEQAGLQDVQVT 165

Query: 173 LVADVVKAYTQVCSANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSL 232
           + A+V + Y ++    ++  +++ +L     + KL Q   D G G E  V  S  + K++
Sbjct: 166 VAAEVARNYFELRGTQKQLDVSKRTLTNLRDTQKLTQTRWDLGAGSELDVQSSLARLKAI 225

Query: 233 RAELPRFKAERETGMYTLAALLAKPVDQLPAGTADCAELPHLNQLVPVGDGAALLKRRPD 292
            A++P  +       + +A LL +  + L A T      P   + +P+GD A+LL++RPD
Sbjct: 226 EADIPLLETAEAQYRHRIAVLLGQQPNALDA-TLVARTAPPFARALPLGDTASLLRQRPD 284

Query: 293 VRQAERQLAAATAYIGVATGALYPDISIGAQVGTI-GILENLGEPSTNRWGFGPQISWSI 351
           VR AER+LAAATA +GVAT  L+P IS+   VG + G    L + +   W   P ISW+ 
Sbjct: 285 VRTAERRLAAATAQVGVATADLFPRISVSGFVGFLSGDAARLTQGNAKAWSITPSISWAA 344

Query: 352 PTNGT-RARIRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAK 410
              GT RAR+R ++A  + ALA +   VL A+ +T+  L  Y     R   + +   +A+
Sbjct: 345 FDFGTVRARLRASKAQAEGALAQYQQTVLLALEDTENALTGYGRQQARLAIVVDQANAAR 404

Query: 411 EAADQTHRYYQAGRESFLADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGWKGTA 470
            A       Y+ G E FL  L A RT       LA A + V  G + V+ ALGG  +G A
Sbjct: 405 RAEQLAQIRYREGSEDFLTLLDAQRTQLAADDALAQAEAAVNVGVVGVYKALGGWKQGEA 464