Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 504 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  186 bits (473), Expect = 1e-51
 Identities = 149/468 (31%), Positives = 227/468 (48%), Gaps = 23/468 (4%)

Query: 13  LGACMM----VGPDYEVPGDAAVQRNDLNGPLRQDADSVVSAPVP-EDWWQLYQDQRLNE 67
           LGA ++    +GPDY+ PG        ++ P    A+S  +  V  E WW L+ D  L+ 
Sbjct: 10  LGAALLSGCAIGPDYQRPG--------MDLPSAWRAESADAGMVAGEKWWTLFGDATLDA 61

Query: 68  LVRQALSANTELRVAAANIAKARAQVEVAESQ--GGFNGGVKLGAQRLQESGEAFLQPEK 125
           L  +AL+AN +L  A AN+  +RAQ+ VA S       G      QR  E G+     E 
Sbjct: 62  LEEEALAANGDLATAMANVDASRAQLTVATSYLLPSITGQGSSVRQRGSERGQN-PPVEG 120

Query: 126 VPVANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVADVVKAYTQVC 185
             V ++ +A   AS++ DLWG ++R  EAA+A     +AA  T R+ +V+ V ++Y  + 
Sbjct: 121 REVTDLHKASALASFELDLWGKYRRAHEAARAGLLGTEAAYATVRLAVVSQVAQSYFGLR 180

Query: 186 SANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAELPRFKAERET 245
           +A+ +  IAR++L  +E+S+K+ +   ++G   E    ++Q +  S RA + + +     
Sbjct: 181 AADRQLDIARQTLTSREESLKIREARFNSGLTSELDYRQAQAETASARASVRQLEQAVAA 240

Query: 246 GMYTLAALLAKP----VDQLPAGTADCAELPHLNQLVPVGDGAALLKRRPDVRQAERQLA 301
               L++LL +     V++ P    D  E   +   +P G  A LL RRPDV +AE  L 
Sbjct: 241 AETALSSLLGRSPRDIVERSPERGLD-IETFAVPPQIPAGLPAGLLARRPDVARAEADLH 299

Query: 302 AATAYIGVATGALYPDISIGAQVGTIGI-LENLGEPSTNRWGFGPQISWSIPTNG-TRAR 359
            ATA IGVA   L P IS+   +G   I L  L   S+  W +G   +  +   G T A 
Sbjct: 300 YATASIGVAKADLLPAISLTGLMGYESIDLTRLVSSSSGTWSYGASATMPLLDFGRTLAN 359

Query: 360 IRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEAADQTHRY 419
           I MA+A  +AALA ++  V +A RETQ  L          DA A    + + +       
Sbjct: 360 IDMADAKQRAALAAYEQAVRDAFRETQDALVANRKTRQVVDAQATQVAALERSLTLARLR 419

Query: 420 YQAGRESFLADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGWK 467
           Y+ G  S+L  L A R+    +  L  A        + V  +LGGGWK
Sbjct: 420 YENGYSSYLEVLDAERSLFQAQLNLVEARRNQLDAVVQVCKSLGGGWK 467