Pairwise Alignments

Query, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

Subject, 324 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  218 bits (554), Expect = 2e-61
 Identities = 128/308 (41%), Positives = 179/308 (58%), Gaps = 30/308 (9%)

Query: 10  RVVLTLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQKVEVRDNQTV 69
           RV++T  +   A +L W +  +YM +PWTRDG +RA+V+ IAPDVSG +  + VRDNQ V
Sbjct: 8   RVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRAEVVNIAPDVSGQVVALPVRDNQLV 67

Query: 70  KRGDVLFTIDQDRFTLALRQAKATLGERQETL------------------AQASREA--- 108
           K+GD+L  ID  R+TLAL+QA+A +  R+  L                  AQA R A   
Sbjct: 68  KKGDLLMEIDPARYTLALQQAEAAVTARKAELDVRRAEVEARRADLNMRRAQARRRADVD 127

Query: 109 ------QRNRKLGNLVAAE--QLEESQSREARARSAVSEAQVAVDTAQLNLDRSVVRSPV 160
                 +     G+ V A   QLE +Q++   A++    A    DTA+LNL+R+ V SPV
Sbjct: 128 ALVVSREAREDAGSQVTASQAQLEAAQAQLQGAQAQYQAALSQRDTARLNLERTKVFSPV 187

Query: 161 DGYLNDRAPRNHEFVTAGRPVLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGDNTR 220
           DGY+ +   R  ++  AG   ++V+DS S+ V  YFEETKL  + IGD   I+++ +   
Sbjct: 188 DGYITNLNVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRARIQLI-NGAS 246

Query: 221 LRGHVQSFAAGIEDRDRSSGANLLPNVNPAFSWVRLAQRIPVRIAFDEVPQDFRMIAGRT 280
           + GHV S A GI DRD      L  +VNP F+WVRLAQRIPVRI  D+VP++  + +G T
Sbjct: 247 MEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIQLDKVPENVLLASGLT 306

Query: 281 ATVSIIEG 288
            TV +  G
Sbjct: 307 CTVVLEPG 314