Pairwise Alignments

Query, 718 a.a., Toxin secretion ATP-binding protein from Pseudomonas putida KT2440

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  276 bits (706), Expect = 3e-78
 Identities = 192/674 (28%), Positives = 323/674 (47%), Gaps = 18/674 (2%)

Query: 33  HQKPASRVMLTTGLPLPAQRLSPELLPRAAARAGLQGRLLQRKLEQIPSIAMPAMLLLKE 92
           H+K  S   L   L +    L+   +  AA   GL+ ++ +  ++   ++ +PA++  + 
Sbjct: 39  HKKSTSS-QLKHALGVSYANLTDMEMREAADYLGLKSQITKLSIQAFNTLPLPALIEYQG 97

Query: 93  GRSAVLLGWENDDTARLLLSESDGGEVHVSREALLSDYSGRVFFAQPQHKFDVNHGNLIP 152
           G   ++   +N  TA    ++S       S E+  + Y   +   +     +V  G    
Sbjct: 98  GWKVMIQTDDNGWTAYDPATDSLHTLSFTSAEST-AHYKVMLIADESLSVKEVKFG---- 152

Query: 153 RAKSWFRDTLLRSKWLYIDAIAASLVINLIALAAPLFVMNVYDRVVPNQATSTLWVLAIG 212
              SWF  ++LR K    D    ++ + + AL +P+   NV D+V+  ++ S+L VLA+ 
Sbjct: 153 --LSWFAPSILRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALA 210

Query: 213 IAGAYIFDLILKGLRGLCLDLAGKKTDLIISATLFERIVGMSMKY-RPARVGSFAQNIHE 271
           +    I +     LR         + +  +S  L+  +VG+ + Y +  + G     + E
Sbjct: 211 MLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVRE 270

Query: 272 FQGLRDFLASLTLTSLIDLPFTILILIVIAIIGGHLVWIPI----IAFPLALGIGYALQR 327
              +R FL   TL  L+DL F  + L V+      L W+ I    I F L L  G  +++
Sbjct: 271 MAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRK 330

Query: 328 PLMATMERTMALASERQSSLIETLAGLDAVKVNNAESERQYMWEQTLGTLSRLELRVKVL 387
            + +  E      +   + L E + G++ +K    E      W++ L          +  
Sbjct: 331 KVESEYESD----ANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKS 386

Query: 388 SSLAMNITLLIQQLAGVAMICVGVYLIIDGNLSMGGLVACYMLSGRALGPLGQLNGLLAR 447
             +A     L+Q+L    ++  GV  ++ G ++ G LVA  ML+G    P+ +L  +   
Sbjct: 387 GLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQD 446

Query: 448 YQQAKVTMVSTDHMMDLPQERNFEERPLSRKVLQGSVEFRGVDFTYPNQQNLALKNINLT 507
           +Q   + +     ++D P+E N ++   S   L G +EF  + F Y       L N++L 
Sbjct: 447 FQHTLIALRRVGDILDEPRE-NSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSLK 505

Query: 508 IRPGEKVGIIGRSGSGKSSLAKLIVGLYEADGGSLLVDGVDIRQIDVSELRHNIGYVPQD 567
           I+PG+ +G+ G SGSGKS+L +L+  LY    G +LVDG+D+   D   LR N+  V Q+
Sbjct: 506 IKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQE 565

Query: 568 IQLLAGTLRDNLVSGARYIEDELILQAAELAGVHEFARLHPDGYELQVGERGQNLSGGQR 627
             L +G++ DN+        DE I  AA+LAG   F    P G+   VGE+G  LSGGQR
Sbjct: 566 SILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQR 625

Query: 628 QNVALGRALLLNPQILLLDEPTSAMDNTGEERLKQRLQAVVEGKTVLLVTHRASLLSLVD 687
           Q +AL RALL+NP+ILLLDE TSA+D   E  +   +  +  G+TV+ + HR + +   D
Sbjct: 626 QRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHAD 685

Query: 688 RLIVIDRGQIVADG 701
            + V+D+GQ+   G
Sbjct: 686 NIFVLDKGQVAESG 699



 Score = 25.8 bits (55), Expect = 0.008
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 679 RASLLSLVDRLIVIDRGQIVADGPKAAVMD 708
           +++L  L+ RL V   GQ++ DG   A+ D
Sbjct: 522 KSTLTRLLQRLYVPQHGQVLVDGMDLAIAD 551