Pairwise Alignments

Query, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 634 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (401), Expect = 5e-43
 Identities = 118/494 (23%), Positives = 224/494 (45%), Gaps = 11/494 (2%)

Query: 155 LLLCGAASAVLGALLLRRQLRPLDYMVEQSHAIARREFLSLPELPRTPELRRVVQAMNQM 214
           LLL      V+  LL+ +    + Y  +    I    F ++       E+  V  A+ + 
Sbjct: 139 LLLTYIVLVVVFILLINKVRAAIRYAADYITHIPEMNFSAIESSKLNGEMTPVRLALEEC 198

Query: 215 VEKLKALFTEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGYLLLLRV 274
             +LK+        +++L   +YQD +TG  +R  F  +L + +SN    + G + +++ 
Sbjct: 199 RAQLKSQMDSLTNENQKLHKVAYQDPITGFGSRPRFTTKLES-ISNHAVPQLGLMAMVKA 257

Query: 275 QGLAGLNARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEA 334
             LA +N   G    D  L  +   +R+  + YP+      R    +FA+  P +V ++ 
Sbjct: 258 TELAHINQLQGRSAGDDYLSNLATCIRKASSKYPDAE--CYRVSSADFAIFLPDLVLKDG 315

Query: 335 VHLAQALEATLQSLHETGASDIDPVACIGLAPFSPGDSPQALLKLADEALARAENQPTPG 394
                 L+  L    +   ++    A +GL P+  G  P  LL LAD A++ A+    P 
Sbjct: 316 PKFLDQLKILLDEYQQMIKTE--SAAHVGLVPYQQGADPVNLLSLADTAVSIAQTLG-PN 372

Query: 395 WVCLEQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDG 454
              +++ +          W   ++        + F QP+  C +   V + ++++R  + 
Sbjct: 373 SYHIQEKLNGDEQFGDDRWKLAINDLITRQALKFFQQPIQPCRNDVEV-YRELLARFYNS 431

Query: 455 QGEALPAGRFLPWLERFGWMPRLDVLVLEKVLAHLRGHDQV---LALNLSAATLADPKAL 511
           +G+ LP    +   ER G    LD LV+   L  L+ +  +     +N+SA +      +
Sbjct: 432 EGKFLPTTTVIAMAERHGMSTELDKLVVISTLKMLKENPTISGNFGINISAFSAHQELFV 491

Query: 512 QRVFELLGQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLHGLGFGLALQRFGGRFSMIG 570
             + ++LG++  +  RLVFEI E  +     A  +  R +H +G  ++++RFG  F+   
Sbjct: 492 GWLRDILGKHRYIASRLVFEINESGMQANLGASYKFVREVHSVGSRVSIERFGMSFTSFK 551

Query: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLE 630
             + +   Y+K+DGSY  +ID + + + F+  +   A  I + +IA  VE + E+L L +
Sbjct: 552 FFSEVRPDYIKLDGSYTASIDEDSNNKFFVRMMVDVARRIGIRVIATSVERQEEKLTLEK 611

Query: 631 MGVGGIQGQLVGEP 644
           + V G+QG  + +P
Sbjct: 612 LLVDGLQGYYISQP 625