Pairwise Alignments

Query, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (286), Expect = 1e-29
 Identities = 123/451 (27%), Positives = 211/451 (46%), Gaps = 38/451 (8%)

Query: 221 LFTEQAERSERLRAESYQ---DSLTGLSNRRYFEMQLNNRVSNLEDARAGY-LLLLRVQG 276
           LF++ +ER +  +   YQ   DSLTGL+NR     Q+   + N +    G+  +L+ +  
Sbjct: 297 LFSDVSERKKAAQLIKYQANNDSLTGLANRNALFRQIQELI-NADSLTPGFSFMLMDLDN 355

Query: 277 LAGLNARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHE-EAV 335
              +N   G  + D LL  + EQ++  C    +   + +R  G EFA+L PG+V + E  
Sbjct: 356 FKQVNDTYGHDKGDVLLVQMVEQVK-ICL---DPQAVFARLGGDEFAILLPGVVTQRELS 411

Query: 336 HLAQALEATLQSLHETGASD-IDPVACIGLAPFSPGDSP--QALLKLADEAL----ARAE 388
            LA  +   +   +E      +     IG+A F P D+   + LL  AD+A+    A   
Sbjct: 412 QLADKINKQVYRRYELSHDKGVYSSVSIGIARF-PEDALDLEQLLNCADQAMYISKANGR 470

Query: 389 NQPTPGWVCLEQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVI 448
           N+       ++Q    +A       H  L QA     FEL+FQP+++ A++  ++  +V+
Sbjct: 471 NRYHFFTEQMQQNAERIAN-----LHTLLKQALEQNAFELYFQPIVD-ATTGLIVRAEVL 524

Query: 449 SRLRDGQGEALPAGRFLPWLERFGWMPRLDVLVLEKVLAHL-----RGHDQVLALNLS-- 501
            R +  +G+ +    F+P  E  G +  +   V + V+  +      G    LA+N+S  
Sbjct: 525 LRWQH-EGQFISPDEFIPIAENSGLIVSIGRCVRQAVMQTIVEMQALGWPMSLAINVSTF 583

Query: 502 ---AATLADP--KALQRVFELLGQNAALGPRLVFEIGEEQLPEQAA-LEQLTRRLHGLGF 555
              +  L D    +   + E LG        +  EI E  L ++ A L Q+   L   G 
Sbjct: 584 EFWSHELQDEFCDSFTDIIEGLGVEDFPYELITLEITESLLMKKHAHLIQVLNELRARGI 643

Query: 556 GLALQRFGGRFSMIGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLI 615
            ++L  FG  +S +  LA+  +  +KID S+I  +   +     IEAI R +H+++L + 
Sbjct: 644 KISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVT 703

Query: 616 AERVETEGERLVLLEMGVGGIQGQLVGEPAP 646
           AE VET+ +  V+++  +  IQG L  +P P
Sbjct: 704 AEGVETQEQLQVMMDNHIQEIQGYLFYKPIP 734