Pairwise Alignments

Query, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  123 bits (308), Expect = 5e-32
 Identities = 119/434 (27%), Positives = 192/434 (44%), Gaps = 19/434 (4%)

Query: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGY-LLLLRVQGLAGLN 281
           T++ +    +  ++  D+LTGL NRR     L+  +   +  R  + L+ L +     +N
Sbjct: 559 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVN 618

Query: 282 ARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMV-HEEAVHLAQA 340
             LG    D LL     +L+    S     D+++R  G EF V+   M  H+    +A+ 
Sbjct: 619 DTLGHAMGDLLLIETASRLK----SCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEH 674

Query: 341 LEATLQSLHETGASDIDPVACIGLAPFSPGDSP--QALLKLADEALARAENQPTPGWVCL 398
           +   +   +  G       A IG+  + P DSP  + LLK AD+A+  A++Q    +   
Sbjct: 675 ILRRIAEPYYLGEETTHISASIGITLY-PDDSPSIEGLLKHADQAMYAAKDQGRNRFNYF 733

Query: 399 EQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDGQGEA 458
              +   A       H+ L QA +N  FEL +QP++  A+ + +    ++      +G  
Sbjct: 734 TPSMQEYAKYRMRLIHD-LRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSV 792

Query: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR------GHDQVLALNLSAATLADPKAL- 511
            PA  F+P  E  G +  +   V E+            G +  +++N S     D  AL 
Sbjct: 793 SPA-EFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALL 851

Query: 512 QRVFELLGQNAALGPRLVFEIGEEQLPEQA-ALEQLTRRLHGLGFGLALQRFGGRFSMIG 570
               ELL Q    G  +  EI E  L + +  + +        G  ++L  FG  +S + 
Sbjct: 852 HNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLA 911

Query: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLE 630
            L    + YLKID S+ RNID +++     EAI   AH + + +IAE VETE +R VLL 
Sbjct: 912 YLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLR 971

Query: 631 MGVGGIQGQLVGEP 644
            G    QG L  +P
Sbjct: 972 AGCDYGQGYLFSKP 985